Detailed information
Bioinformatically predicted
Overview
| Name | comGF/cglF | Type | Machinery gene |
| Locus tag | SPSF3K_RS01960 | Genome accession | NZ_CP025420 |
| Coordinates | 409507..409944 (+) | Length | 145 a.a. |
| NCBI ID | WP_003102915.1 | Uniprot ID | A0ABN0IPC0 |
| Organism | Streptococcus parauberis strain SPOF3K | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 404507..414944
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPSF3K_RS01930 (SPSF3K_00399) | - | 406202..406576 (+) | 375 | WP_003108753.1 | DUF1033 family protein | - |
| SPSF3K_RS01935 (SPSF3K_00400) | comGA | 406630..407571 (+) | 942 | WP_003108751.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SPSF3K_RS01940 (SPSF3K_00401) | comGB | 407483..408538 (+) | 1056 | WP_152414240.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SPSF3K_RS01945 (SPSF3K_00402) | comGC | 408535..408861 (+) | 327 | WP_004347181.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SPSF3K_RS01950 (SPSF3K_00403) | comGD | 408851..409258 (+) | 408 | WP_243619590.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SPSF3K_RS01955 (SPSF3K_00404) | comGE | 409230..409529 (+) | 300 | WP_003108643.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SPSF3K_RS01960 (SPSF3K_00405) | comGF/cglF | 409507..409944 (+) | 438 | WP_003102915.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SPSF3K_RS01965 (SPSF3K_00406) | comGG | 409922..410419 (+) | 498 | WP_003108640.1 | competence type IV pilus minor pilin ComGG | - |
| SPSF3K_RS01970 (SPSF3K_00407) | comGH | 410526..411482 (+) | 957 | WP_003103712.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SPSF3K_RS01975 (SPSF3K_00408) | - | 411538..412731 (+) | 1194 | WP_003108638.1 | acetate kinase | - |
| SPSF3K_RS01980 (SPSF3K_00409) | - | 412842..413054 (+) | 213 | WP_003108636.1 | helix-turn-helix transcriptional regulator | - |
| SPSF3K_RS01985 (SPSF3K_00410) | - | 413047..413499 (+) | 453 | WP_003108634.1 | hypothetical protein | - |
| SPSF3K_RS01990 (SPSF3K_00411) | - | 413508..414161 (+) | 654 | WP_003108632.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16538.25 Da Isoelectric Point: 9.7525
>NTDB_id=218935 SPSF3K_RS01960 WP_003102915.1 409507..409944(+) (comGF/cglF) [Streptococcus parauberis strain SPOF3K]
MLQKLVTKGFTLFEALIALLVISGSLLVYQGLTKSTFANMNYLSQSDQDSWLLFANQFRAELEGSQFIEIKGKKMLVKKD
EKVVSFRLTEKNDFRKSAASGKGLNPMLLNLQDIQMTTVNHQLTLHLIWQSGLERDFIYAFEKPS
MLQKLVTKGFTLFEALIALLVISGSLLVYQGLTKSTFANMNYLSQSDQDSWLLFANQFRAELEGSQFIEIKGKKMLVKKD
EKVVSFRLTEKNDFRKSAASGKGLNPMLLNLQDIQMTTVNHQLTLHLIWQSGLERDFIYAFEKPS
Nucleotide
Download Length: 438 bp
>NTDB_id=218935 SPSF3K_RS01960 WP_003102915.1 409507..409944(+) (comGF/cglF) [Streptococcus parauberis strain SPOF3K]
ATGTTACAAAAATTAGTGACTAAGGGTTTTACCTTATTTGAAGCCTTAATTGCACTTTTAGTTATCTCTGGATCTCTACT
GGTTTATCAAGGTTTAACTAAGTCAACGTTTGCCAATATGAACTATCTAAGTCAAAGTGATCAAGATAGTTGGCTCTTAT
TTGCAAATCAGTTTAGAGCTGAATTGGAAGGTTCACAATTTATTGAAATTAAAGGAAAAAAAATGCTTGTTAAAAAGGAT
GAAAAGGTAGTTTCTTTTAGATTAACTGAAAAAAATGACTTTAGAAAATCGGCAGCTAGTGGGAAAGGCTTAAATCCAAT
GTTGTTAAACTTACAGGATATTCAAATGACGACAGTAAATCACCAACTAACTCTTCATTTGATCTGGCAAAGTGGCCTGG
AAAGGGATTTTATCTATGCATTTGAGAAGCCAAGTTAA
ATGTTACAAAAATTAGTGACTAAGGGTTTTACCTTATTTGAAGCCTTAATTGCACTTTTAGTTATCTCTGGATCTCTACT
GGTTTATCAAGGTTTAACTAAGTCAACGTTTGCCAATATGAACTATCTAAGTCAAAGTGATCAAGATAGTTGGCTCTTAT
TTGCAAATCAGTTTAGAGCTGAATTGGAAGGTTCACAATTTATTGAAATTAAAGGAAAAAAAATGCTTGTTAAAAAGGAT
GAAAAGGTAGTTTCTTTTAGATTAACTGAAAAAAATGACTTTAGAAAATCGGCAGCTAGTGGGAAAGGCTTAAATCCAAT
GTTGTTAAACTTACAGGATATTCAAATGACGACAGTAAATCACCAACTAACTCTTCATTTGATCTGGCAAAGTGGCCTGG
AAAGGGATTTTATCTATGCATTTGAGAAGCCAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGF/cglF | Streptococcus mitis SK321 |
44.928 |
95.172 |
0.428 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
43.796 |
94.483 |
0.414 |
| comGF | Streptococcus mutans UA140 |
42.029 |
95.172 |
0.4 |
| comGF | Streptococcus mutans UA159 |
41.304 |
95.172 |
0.393 |
| comGF/cglF | Streptococcus pneumoniae R6 |
40.58 |
95.172 |
0.386 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
40.58 |
95.172 |
0.386 |
| comGF/cglF | Streptococcus pneumoniae D39 |
40.58 |
95.172 |
0.386 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
40.58 |
95.172 |
0.386 |