Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SPSF3K_RS01950 Genome accession   NZ_CP025420
Coordinates   408851..409258 (+) Length   135 a.a.
NCBI ID   WP_243619590.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403851..414258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS01930 (SPSF3K_00399) - 406202..406576 (+) 375 WP_003108753.1 DUF1033 family protein -
  SPSF3K_RS01935 (SPSF3K_00400) comGA 406630..407571 (+) 942 WP_003108751.1 competence type IV pilus ATPase ComGA Machinery gene
  SPSF3K_RS01940 (SPSF3K_00401) comGB 407483..408538 (+) 1056 WP_152414240.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPSF3K_RS01945 (SPSF3K_00402) comGC 408535..408861 (+) 327 WP_004347181.1 competence type IV pilus major pilin ComGC Machinery gene
  SPSF3K_RS01950 (SPSF3K_00403) comGD 408851..409258 (+) 408 WP_243619590.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPSF3K_RS01955 (SPSF3K_00404) comGE 409230..409529 (+) 300 WP_003108643.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPSF3K_RS01960 (SPSF3K_00405) comGF/cglF 409507..409944 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPSF3K_RS01965 (SPSF3K_00406) comGG 409922..410419 (+) 498 WP_003108640.1 competence type IV pilus minor pilin ComGG -
  SPSF3K_RS01970 (SPSF3K_00407) comGH 410526..411482 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  SPSF3K_RS01975 (SPSF3K_00408) - 411538..412731 (+) 1194 WP_003108638.1 acetate kinase -
  SPSF3K_RS01980 (SPSF3K_00409) - 412842..413054 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  SPSF3K_RS01985 (SPSF3K_00410) - 413047..413499 (+) 453 WP_003108634.1 hypothetical protein -
  SPSF3K_RS01990 (SPSF3K_00411) - 413508..414161 (+) 654 WP_003108632.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15354.77 Da        Isoelectric Point: 9.6000

>NTDB_id=218933 SPSF3K_RS01950 WP_243619590.1 408851..409258(+) (comGD) [Streptococcus parauberis strain SPOF3K]
MLNKEVSAFTYFESLLCLVITCFSVIILTTSVGTVFEKVTNNLFYIEFENFYRHSQKISILKRVAGTMVFKEKSISYHNE
TITLPDTIRLGFVNKVKINQFGGNHSLAKINFISSDETVTYTLNLGSGTYKKTKN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=218933 SPSF3K_RS01950 WP_243619590.1 408851..409258(+) (comGD) [Streptococcus parauberis strain SPOF3K]
ATGTTAAATAAGGAAGTATCAGCGTTTACCTATTTTGAATCTTTACTATGTCTAGTAATTACTTGTTTTTCAGTTATTAT
ATTGACAACAAGTGTGGGTACAGTATTTGAAAAAGTTACAAATAATCTATTCTATATTGAATTTGAAAATTTTTATCGGC
ATAGTCAAAAAATTTCCATACTAAAACGGGTTGCAGGAACAATGGTATTTAAGGAAAAATCAATTTCATATCACAATGAA
ACAATTACCTTACCAGATACAATCAGACTTGGATTTGTTAACAAGGTAAAGATAAACCAGTTTGGTGGAAATCATTCCCT
TGCTAAAATAAATTTTATTAGTTCGGATGAAACTGTTACTTATACTCTAAATTTAGGAAGTGGTACTTATAAAAAAACAA
AAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

40.458

97.037

0.393
  comGD Streptococcus mutans UA159

40.458

97.037

0.393