Detailed information NTG0218926

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: B1761_RS04750
• Genome accession: NZ_CP019935
• Coordinates: 899187..899624 (-)
• Length: 145 a.a.
• NCBI ID: WP_014608742.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain APC151
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 894187..904624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1761_RS04710 (B1761_04760)	-	894251..894913 (-)	663	WP_011681679.1	CPBP family intramembrane glutamic endopeptidase	-
B1761_RS04715 (B1761_04765)	-	895010..895453 (-)	444	WP_011681680.1	hypothetical protein	-
B1761_RS10705 (B1761_04770)	-	895527..895865 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
B1761_RS10710 (B1761_04775)	-	895909..896184 (-)	276	WP_011681681.1	hypothetical protein	-
B1761_RS04730 (B1761_04780)	-	896196..896393 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
B1761_RS04735 (B1761_04785)	-	896642..897835 (-)	1194	WP_014608740.1	acetate kinase	-
B1761_RS04740 (B1761_04790)	comYH	897891..898847 (-)	957	WP_014608741.1	class I SAM-dependent methyltransferase	Machinery gene
B1761_RS04745 (B1761_04795)	comGG	898892..899209 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
B1761_RS04750 (B1761_04800)	comYF	899187..899624 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
B1761_RS04755 (B1761_04805)	comGE	899608..899901 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
B1761_RS04760 (B1761_04810)	comYD	899873..900301 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
B1761_RS04765 (B1761_04815)	comYC	900261..900587 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
B1761_RS04770 (B1761_04820)	comYB	900584..901684 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
B1761_RS04775 (B1761_04825)	comGA/cglA/cilD	901566..902507 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
B1761_RS04780 (B1761_04830)	-	902588..902950 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16505.05 Da
• Isoelectric Point: 8.9784

>NTDB_id=218926 B1761_RS04750 WP_014608742.1 899187..899624(-) (comYF) [Streptococcus thermophilus strain APC151]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=218926 B1761_RS04750 WP_014608742.1 899187..899624(-) (comYF) [Streptococcus thermophilus strain APC151]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441