Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   B1761_RS04740 Genome accession   NZ_CP019935
Coordinates   897891..898847 (-) Length   318 a.a.
NCBI ID   WP_014608741.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain APC151     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892891..903847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1761_RS04705 (B1761_04755) proC 893451..894221 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  B1761_RS04710 (B1761_04760) - 894251..894913 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  B1761_RS04715 (B1761_04765) - 895010..895453 (-) 444 WP_011681680.1 hypothetical protein -
  B1761_RS10705 (B1761_04770) - 895527..895865 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  B1761_RS10710 (B1761_04775) - 895909..896184 (-) 276 WP_011681681.1 hypothetical protein -
  B1761_RS04730 (B1761_04780) - 896196..896393 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  B1761_RS04735 (B1761_04785) - 896642..897835 (-) 1194 WP_014608740.1 acetate kinase -
  B1761_RS04740 (B1761_04790) comYH 897891..898847 (-) 957 WP_014608741.1 class I SAM-dependent methyltransferase Machinery gene
  B1761_RS04745 (B1761_04795) comGG 898892..899209 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  B1761_RS04750 (B1761_04800) comYF 899187..899624 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  B1761_RS04755 (B1761_04805) comGE 899608..899901 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  B1761_RS04760 (B1761_04810) comYD 899873..900301 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  B1761_RS04765 (B1761_04815) comYC 900261..900587 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  B1761_RS04770 (B1761_04820) comYB 900584..901684 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  B1761_RS04775 (B1761_04825) comGA/cglA/cilD 901566..902507 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  B1761_RS04780 (B1761_04830) - 902588..902950 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=218925 B1761_RS04740 WP_014608741.1 897891..898847(-) (comYH) [Streptococcus thermophilus strain APC151]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHILMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=218925 B1761_RS04740 WP_014608741.1 897891..898847(-) (comYH) [Streptococcus thermophilus strain APC151]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATATTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679

Multiple sequence alignment