Detailed information NTG0218810

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CRH08_RS00340
• Genome accession: NZ_CP025419
• Coordinates: 57139..58140 (+)
• Length: 333 a.a.
• NCBI ID: WP_002935300.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SH0104
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 52139..63140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRH08_RS00315	-	52193..52771 (+)	579	WP_002935308.1	CPBP family intramembrane glutamic endopeptidase	-
CRH08_RS00320	-	52786..53214 (+)	429	WP_002935307.1	Msa family membrane protein	-
CRH08_RS00325	-	53207..54078 (+)	872	Protein_45	ABC transporter ATP-binding protein	-
CRH08_RS00330	-	54084..54854 (+)	771	WP_002935304.1	membrane protein	-
CRH08_RS00335	-	54857..56569 (+)	1713	WP_002935303.1	ABC transporter ATP-binding protein	-
CRH08_RS11615	-	56671..56844 (+)	174	WP_002935301.1	hypothetical protein	-
CRH08_RS00340	ruvB	57139..58140 (+)	1002	WP_002935300.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CRH08_RS00345	-	58140..58886 (+)	747	WP_002935299.1	GNAT family N-acetyltransferase	-
CRH08_RS00350	-	58888..59526 (+)	639	WP_002935298.1	HAD-IA family hydrolase	-
CRH08_RS00355	comR	59773..60690 (+)	918	WP_002935296.1	helix-turn-helix domain-containing protein	Regulator
CRH08_RS00360	-	60955..62196 (+)	1242	WP_013730059.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37640.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=218810 CRH08_RS00340 WP_002935300.1 57139..58140(+) (ruvB) [Streptococcus suis strain SH0104]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=218810 CRH08_RS00340 WP_002935300.1 57139..58140(+) (ruvB) [Streptococcus suis strain SH0104]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTCAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTTTTTGGCCCACCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCCAACGAATTGGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCGGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCGTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTATCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGAACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCTTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGAGACGGCCTGATT
GATGATAACATTACGGACAAGGCCCTGACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAACACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.368	98.799	0.508
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474