Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   B2G52_RS06490 Genome accession   NZ_CP019894
Coordinates   1159427..1160023 (+) Length   198 a.a.
NCBI ID   WP_003707450.1    Uniprot ID   A0A1V0DU72
Organism   Neisseria lactamica strain Y92-1009     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154427..1165023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS06455 (B2G52_06455) - 1154504..1154836 (+) 333 WP_003712867.1 hypothetical protein -
  B2G52_RS06460 (B2G52_06460) - 1154901..1155482 (-) 582 WP_003712868.1 superoxide dismutase -
  B2G52_RS06470 (B2G52_06470) dnaB 1155648..1157060 (+) 1413 WP_003712870.1 replicative DNA helicase -
  B2G52_RS06475 (B2G52_06475) pilH 1157205..1157870 (+) 666 WP_003707444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B2G52_RS06480 (B2G52_06480) pilI 1157899..1158510 (+) 612 WP_003712874.1 type IV pilus modification protein PilV Machinery gene
  B2G52_RS06485 (B2G52_06485) pilJ 1158507..1159448 (+) 942 WP_003712876.1 PilW family protein Machinery gene
  B2G52_RS06490 (B2G52_06490) pilK 1159427..1160023 (+) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B2G52_RS06495 (B2G52_06495) pilL 1160025..1160498 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  B2G52_RS06500 (B2G52_06500) - 1160568..1160876 (-) 309 WP_003707454.1 AzlD family protein -
  B2G52_RS06505 (B2G52_06505) - 1160873..1161583 (-) 711 WP_045750211.1 AzlC family ABC transporter permease -
  B2G52_RS06510 (B2G52_06510) dut 1161725..1162177 (+) 453 WP_003712881.1 dUTP diphosphatase -
  B2G52_RS06515 (B2G52_06515) dapC 1162255..1163442 (+) 1188 WP_003712882.1 succinyldiaminopimelate transaminase -
  B2G52_RS06520 (B2G52_06520) yaaA 1163597..1164376 (+) 780 WP_003712884.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21808.69 Da        Isoelectric Point: 5.3292

>NTDB_id=218737 B2G52_RS06490 WP_003707450.1 1159427..1160023(+) (pilK) [Neisseria lactamica strain Y92-1009]
MRKQNTLTGIPTSDGQKGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALRDGEFQVLDLEYTT
DSKVTFSENCENGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTNLCIDNKGMVYGKGTGSVSKMPRYIIE
YLGVKNNQNIYRVTAKAWGKNANTVVVLQSYVSNNDEQ

Nucleotide


Download         Length: 597 bp        

>NTDB_id=218737 B2G52_RS06490 WP_003707450.1 1159427..1160023(+) (pilK) [Neisseria lactamica strain Y92-1009]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAAAGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATTGTCGTGGCCTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGACGGCGAATTTCAGGTTTTGGATTTGGAATATACTACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATTGTGGTGCAAGGCAAGCCTACCGTTGAAGCCGTGAAGCGTTTTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAACAAGGGGATGGTATATGGGAAAGGTACGGGAAGCGTCAGCAAAATGCCGCGTTATATTATCGAA
TATTTGGGTGTGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTGCAATCTTATGTAAGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0DU72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.909

Multiple sequence alignment