Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B2G52_RS06475 Genome accession   NZ_CP019894
Coordinates   1157205..1157870 (+) Length   221 a.a.
NCBI ID   WP_003707444.1    Uniprot ID   A0A1V0DWR6
Organism   Neisseria lactamica strain Y92-1009     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1152205..1162870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS06445 (B2G52_06445) cysW 1152234..1153094 (-) 861 WP_003712863.1 sulfate ABC transporter permease subunit CysW -
  B2G52_RS06450 (B2G52_06450) cysT 1153482..1154318 (-) 837 WP_003712865.1 sulfate ABC transporter permease subunit CysT -
  B2G52_RS06455 (B2G52_06455) - 1154504..1154836 (+) 333 WP_003712867.1 hypothetical protein -
  B2G52_RS06460 (B2G52_06460) - 1154901..1155482 (-) 582 WP_003712868.1 superoxide dismutase -
  B2G52_RS06470 (B2G52_06470) dnaB 1155648..1157060 (+) 1413 WP_003712870.1 replicative DNA helicase -
  B2G52_RS06475 (B2G52_06475) pilH 1157205..1157870 (+) 666 WP_003707444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B2G52_RS06480 (B2G52_06480) pilI 1157899..1158510 (+) 612 WP_003712874.1 type IV pilus modification protein PilV Machinery gene
  B2G52_RS06485 (B2G52_06485) pilJ 1158507..1159448 (+) 942 WP_003712876.1 PilW family protein Machinery gene
  B2G52_RS06490 (B2G52_06490) pilK 1159427..1160023 (+) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  B2G52_RS06495 (B2G52_06495) pilL 1160025..1160498 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  B2G52_RS06500 (B2G52_06500) - 1160568..1160876 (-) 309 WP_003707454.1 AzlD family protein -
  B2G52_RS06505 (B2G52_06505) - 1160873..1161583 (-) 711 WP_045750211.1 AzlC family ABC transporter permease -
  B2G52_RS06510 (B2G52_06510) dut 1161725..1162177 (+) 453 WP_003712881.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24492.93 Da        Isoelectric Point: 8.8970

>NTDB_id=218734 B2G52_RS06475 WP_003707444.1 1157205..1157870(+) (pilH) [Neisseria lactamica strain Y92-1009]
MCTRKQQGFTLIELLIVMVIAAIMAMIALPSMSRWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NQCDFSKKGQGMLAFGDKNGNKAYDGDAADVFLRSVVLNDADDSRINYAFNHIAFGQTQPTADRVVWTFNQNGAFGYSSD
QNLTRTSRFVYSDGYIQIVLTDAKAVSADEKKFRSAVVLIDGSGRVEVCPRNDTRAVCQHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=218734 B2G52_RS06475 WP_003707444.1 1157205..1157870(+) (pilH) [Neisseria lactamica strain Y92-1009]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGTCATCGCAGCCATTATGGCGATGAT
AGCCCTCCCCAGTATGAGCCGGTGGATTGCATCCCGCCGCATCGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAATGCGACTTCAGTAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTGTTGAATGATGCCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTCAAACACAGCCGACTGCCGACCGTGTTGTTTGGACTTTCAACCAAAACGGGGCATTCGGCTATTCGTCCGAT
CAGAATCTCACGCGCACTTCTAGATTTGTTTACTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGCCGATGAAAAGAAATTCCGTTCGGCAGTGGTTTTGATTGACGGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACGATA
CGCGCGCCGTATGCCAACATCAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-178)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0DWR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.909

99.548

0.855

Multiple sequence alignment