Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   B2G52_RS04335 Genome accession   NZ_CP019894
Coordinates   770076..772253 (-) Length   725 a.a.
NCBI ID   WP_078835885.1    Uniprot ID   A0AAU8VEA2
Organism   Neisseria lactamica strain Y92-1009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765076..777253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS04285 (B2G52_04285) - 765081..765545 (-) 465 WP_003714374.1 ATP cone domain-containing protein -
  B2G52_RS04290 (B2G52_04290) - 765575..766417 (-) 843 WP_003714373.1 class II glutamine amidotransferase -
  B2G52_RS04310 (B2G52_04310) aroB 767147..768226 (-) 1080 WP_003714371.1 3-dehydroquinate synthase -
  B2G52_RS04315 (B2G52_04315) - 768311..768823 (-) 513 WP_003714369.1 shikimate kinase -
  B2G52_RS04335 (B2G52_04335) pilQ 770076..772253 (-) 2178 WP_078835885.1 type IV pilus secretin PilQ Machinery gene
  B2G52_RS04340 (B2G52_04340) pilP 772271..772816 (-) 546 WP_003710240.1 pilus assembly protein PilP Machinery gene
  B2G52_RS04345 (B2G52_04345) - 772834..773496 (-) 663 WP_078835886.1 type 4a pilus biogenesis protein PilO -
  B2G52_RS04350 (B2G52_04350) pilN 773497..774096 (-) 600 WP_003710236.1 PilN domain-containing protein Machinery gene
  B2G52_RS04355 (B2G52_04355) pilM 774099..775214 (-) 1116 WP_003710234.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78415.34 Da        Isoelectric Point: 9.8469

>NTDB_id=218723 B2G52_RS04335 WP_078835885.1 770076..772253(-) (pilQ) [Neisseria lactamica strain Y92-1009]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEVVNPTGFITSSPARIALDFEQTGISMNQQVL
EYADPLLGKISAAQNGSRARLVLNLNKPGQYNTEVRGNEVWILINESDDTVSAPARPAVKSAPAATAKQQPAAPFTESVV
SVSAPFTPSKQQEAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQRDHIIVTLKNHTLPTALQRSLDVADFKTPV
QKVTLKRLNNDTQLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFKGRKISLDFQDVEVRTILQILAK
ESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNF
QLKYKNVEEFRSILRLDNADTTGNRNTLISGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAA
DGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESL
SKTKTLANPRVLTQNRKEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTV
KDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFITPRIMDTAG
NNLRY

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=218723 B2G52_RS04335 WP_078835885.1 770076..772253(-) (pilQ) [Neisseria lactamica strain Y92-1009]
ATGAATACCAAACTGACAAAAATCATTTCCGGCCTGTTTGTCGCAACCGCCGCCTTTCAAACGGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAGCAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGGTTGTCAACCCGA
CCGGCTTCATCACTTCGTCGCCCGCGCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGAATCAACAGGTACTC
GAGTATGCCGACCCTCTGTTGGGCAAAATCAGTGCCGCACAAAACGGCAGCCGTGCGCGTCTGGTTCTGAATCTGAACAA
ACCGGGTCAATACAATACCGAAGTACGCGGAAATGAAGTTTGGATTCTCATCAACGAATCGGACGATACCGTGTCCGCCC
CCGCCCGCCCCGCCGTAAAATCCGCGCCTGCCGCAACGGCAAAACAACAGCCTGCCGCACCGTTTACCGAGTCCGTGGTA
TCCGTATCCGCACCCTTTACCCCTTCAAAACAACAGGAGGCGGCACCGGCAAAACAAACCAATATCGATTTCCGCAAAGA
CGGCAAAAATGCCGGCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAGCGCGACCACA
TCATCGTTACGCTGAAAAACCATACCCTGCCGACCGCGCTCCAACGCAGTTTGGATGTGGCAGACTTCAAAACACCGGTT
CAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAACTGATTATCACGACAACCGGCAACTGGGAACTCGTCAACAA
ATCCGCCGCACCCGGATACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGC
CCAAAACCTTCAAAGGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAGTCCGCACCATCCTGCAGATTTTGGCCAAA
GAATCCGGAATGAACATTGTTGCCAGCGACTCCGTCAACGGCAAAATGACCCTCTCCCTCAAAGATGTGCCTTGGGATCA
GGCTTTGGATTTGGTTATGCAGGCGCGCAACCTCGATATGCGCCAGCAAGGAAACATCGTCAACATCGCGCCCCGCGACG
AGCTGCTTGCCAAAGACAAAGCCTTCTTACAGGCAGAAAAAGACATCGCCGATTTGGGCGCGCTGTATTCCCAAAACTTC
CAGTTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGACACGACCGGAAACCGCAACAC
GCTTATCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAATACCCTGATTGTTACCGATACCCGCAGCGTCATCG
AAAAATTCCGCAAACTGATCGACGAATTGGACGTGCCCGCGCAACAAGTAATGATTGAGGCGCGCATCGTCGAAGCGGCA
GACGGCTTCTCGCGCGATTTGGGCGTTAAGTTCGGCGCGACAGGCAAGAAAAAACTGAAAGATGCTGACCGCGCATTCGG
CTGGGGCGTGAACTCGGGTTTTGAAGGCGGCGAAGGCGGCAAATGGTCTGCCCAAACCAGCATCAACCTGCCGGTTGCCG
CTGCCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGCGCGTTGAATTTGGAATTGTCCGCATCCGAGTCGCTT
TCAAAAACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGCAAAGAGGCCAAAATCGAATCCGGTACGGAAAT
CCCCTTCCAAGACACTTCAAGTTCGGGCGGCAGCAGCAGCACAACCACAACCTTCAAAAAAGCCGTCTTGGGGCTGACCG
TTACGCCGAACATCACGCCCGACGGCCAAATCATCATGACCGTCAAAATCAATAAAGACACACCTGTCGACTGTACCGTA
AAAGATGAGACGACCAAGTGTATCCAAACCAAAAACCTGAATACGCAGGCTATGGTTGAAAACGGCGGCACTTTGATTGT
CGGCGGTATTTATGAAGAAGAGAACGGCAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACC
TCTTTAAAACACGAGGGAAAAGCACCAACCGCCGCGAACTGCTGATTTTCATTACCCCGAGGATTATGGATACGGCCGGC
AACAACCTGCGCTATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(325-370)

Bacterial type II/III secretion system short domain (Secretin_N)

(398-469)

Bacterial type II and III secretion system protein (Secretin)

(557-717)

AMIN domain (AMIN)

(43-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

92.138

100

0.921
  pilQ Neisseria meningitidis MC58

85.344

100

0.908
  pilQ Neisseria meningitidis M1080

85.845

100

0.903

Multiple sequence alignment