Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   XJ28_RS10325 Genome accession   NZ_CP019871
Coordinates   2028572..2030788 (+) Length   738 a.a.
NCBI ID   WP_007245834.1    Uniprot ID   A0AAW4DU14
Organism   Pseudomonas syringae pv. tomato strain B13-200     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2023572..2035788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XJ28_RS10300 (XJ28_10120) - 2023659..2024591 (+) 933 WP_005619741.1 ABC transporter ATP-binding protein -
  XJ28_RS10305 (XJ28_10125) - 2024588..2025376 (+) 789 WP_005770650.1 ABC transporter permease -
  XJ28_RS10310 (XJ28_10130) - 2025410..2026309 (-) 900 WP_007245831.1 DUF6708 domain-containing protein -
  XJ28_RS33005 - 2026306..2027517 (-) 1212 WP_007245832.1 hypothetical protein -
  XJ28_RS32760 tssI 2027669..2028334 (-) 666 Protein_1931 type VI secretion system tip protein TssI/VgrG -
  XJ28_RS10325 (XJ28_10140) comA 2028572..2030788 (+) 2217 WP_007245834.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  XJ28_RS10330 (XJ28_10145) exbB 2030871..2031548 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  XJ28_RS10335 (XJ28_10150) - 2031545..2031976 (+) 432 WP_003381117.1 ExbD/TolR family protein -
  XJ28_RS10340 (XJ28_10155) lpxK 2031976..2032971 (+) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  XJ28_RS10345 (XJ28_10160) - 2032989..2033174 (+) 186 WP_003381112.1 Trm112 family protein -
  XJ28_RS10350 (XJ28_10165) kdsB 2033171..2033935 (+) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  XJ28_RS10355 (XJ28_10170) murB 2033970..2034989 (+) 1020 WP_007245837.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80716.10 Da        Isoelectric Point: 10.7615

>NTDB_id=218663 XJ28_RS10325 WP_007245834.1 2028572..2030788(+) (comA) [Pseudomonas syringae pv. tomato strain B13-200]
MRSGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALKDRLQQRLDGQTLWLQG
KVAGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLLSFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGTWSWWQSWTRAQWLIALGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPVPVVGEGLLWLAGGALQWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPNGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKRFLQAVAPLGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=218663 XJ28_RS10325 WP_007245834.1 2028572..2030788(+) (comA) [Pseudomonas syringae pv. tomato strain B13-200]
ATGCGCTCAGGGATGATCGCGCTCGCGTTGGGGCTGGTGGCCCTGCGCTTTCTGCCGGTTTTGCCGCCGATCTGGCTCTT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTTTCGGCGCAGTGGGCGTTGAAAGACCGTTTGCAGCAACGGCTGGACGGCCAGACACTGTGGCTGCAAGGC
AAAGTGGCCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAACACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCACTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGACTGGCGGTAAAGCTCA
AGCGCCCCGGCGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTTGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGTTTGCTTGCTGGCGTTATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATTGC
TGCGCTGGGCTACGGATTGCTGGCCGGGTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGCTTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGCGGCCGTCTGGGCAC
CTGGAGCTGGTGGCAGAGCTGGACTCGCGCGCAGTGGCTGATCGCTCTTGGCCTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCACTG
ATCGGCACGTTGCTGCTGCCGGTCCCCGTTGTTGGCGAGGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGCAATGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCATGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTGTTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCCATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACACTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAACGGGTGGTCGTGC
CGGCGATGCGCAAGTCCGGTGTTCGTCACTTGGATCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGTGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGCGTGCTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCAACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTACTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCTCACTGGTTGCAAGCCCCGCATCACGGCAGCCGCAGCTCATCGTC
CAAACGGTTTCTGCAGGCGGTTGCGCCGCTGGGCGTGCTCATTTCCCGCGGGCAGAACAATGCCTTCGGTCATCCGCATC
CGTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.827

97.019

0.619
  comA Ralstonia pseudosolanacearum GMI1000

32.619

100

0.371

Multiple sequence alignment