Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   XJ28_RS10330 Genome accession   NZ_CP019871
Coordinates   2030871..2031548 (+) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. tomato strain B13-200     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2025871..2036548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XJ28_RS33005 - 2026306..2027517 (-) 1212 WP_007245832.1 hypothetical protein -
  XJ28_RS32760 tssI 2027669..2028334 (-) 666 Protein_1931 type VI secretion system tip protein TssI/VgrG -
  XJ28_RS10325 (XJ28_10140) comA 2028572..2030788 (+) 2217 WP_007245834.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  XJ28_RS10330 (XJ28_10145) exbB 2030871..2031548 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  XJ28_RS10335 (XJ28_10150) - 2031545..2031976 (+) 432 WP_003381117.1 ExbD/TolR family protein -
  XJ28_RS10340 (XJ28_10155) lpxK 2031976..2032971 (+) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  XJ28_RS10345 (XJ28_10160) - 2032989..2033174 (+) 186 WP_003381112.1 Trm112 family protein -
  XJ28_RS10350 (XJ28_10165) kdsB 2033171..2033935 (+) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  XJ28_RS10355 (XJ28_10170) murB 2033970..2034989 (+) 1020 WP_007245837.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=218664 XJ28_RS10330 WP_003381119.1 2030871..2031548(+) (exbB) [Pseudomonas syringae pv. tomato strain B13-200]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=218664 XJ28_RS10330 WP_003381119.1 2030871..2031548(+) (exbB) [Pseudomonas syringae pv. tomato strain B13-200]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGACTCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCT
GAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCGGTCTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACCGCA
TCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment