Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B0D95_RS18120 Genome accession   NZ_CP019799
Coordinates   4192168..4192755 (+) Length   195 a.a.
NCBI ID   WP_078045172.1    Uniprot ID   A0A1U9NDV7
Organism   Cellvibrio sp. PSBB023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4187594..4199021 4192168..4192755 within 0


Gene organization within MGE regions


Location: 4187594..4199021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0D95_RS18110 (B0D95_18125) uvrA 4187594..4190443 (-) 2850 WP_078045170.1 excinuclease ABC subunit UvrA -
  B0D95_RS18115 (B0D95_18130) - 4190670..4192064 (+) 1395 WP_078045171.1 MFS transporter -
  B0D95_RS18120 (B0D95_18135) ssb 4192168..4192755 (+) 588 WP_078045172.1 single-stranded DNA-binding protein Machinery gene
  B0D95_RS18125 (B0D95_18140) - 4192883..4193809 (+) 927 WP_210403646.1 transporter substrate-binding domain-containing protein -
  B0D95_RS18130 (B0D95_18145) - 4193922..4194962 (+) 1041 WP_078045173.1 LacI family DNA-binding transcriptional regulator -
  B0D95_RS18135 (B0D95_18150) - 4195035..4196507 (-) 1473 WP_078045174.1 MFS transporter -
  B0D95_RS18140 (B0D95_18155) - 4196616..4199021 (-) 2406 WP_078045175.1 glucan 1,4-alpha-glucosidase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 20853.99 Da        Isoelectric Point: 5.2615

>NTDB_id=218436 B0D95_RS18120 WP_078045172.1 4192168..4192755(+) (ssb) [Cellvibrio sp. PSBB023]
MARGINKVILIGNIGQDPEVKYMPSGGAVTNVSVATSETWKDKNTGQPQERTEWHRVVFFNRLGEIAGEYLKKGSKVYIE
GSLRTRKWQAQDGSDRYTTEIVASEMQMLDGRGDGSGMGNAMGGAAAMAGGFDQTPQYNNGPAQNAYNQAAPKPAGNNQG
GNQGGFGQPANRPAPQQNVPPQPAGFDSFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=218436 B0D95_RS18120 WP_078045172.1 4192168..4192755(+) (ssb) [Cellvibrio sp. PSBB023]
ATGGCTCGTGGTATTAACAAAGTAATTTTAATTGGCAATATCGGGCAAGACCCGGAAGTAAAATACATGCCTTCCGGCGG
TGCCGTGACCAATGTCAGCGTAGCCACCTCGGAAACCTGGAAAGACAAAAACACTGGCCAACCACAAGAGCGCACTGAGT
GGCATCGTGTGGTATTTTTTAATCGCCTGGGTGAAATCGCCGGTGAATACCTGAAGAAAGGTTCCAAAGTGTATATCGAA
GGTTCCTTGCGCACCCGTAAATGGCAAGCGCAAGACGGTAGCGATCGCTACACCACCGAGATTGTCGCCAGCGAAATGCA
AATGCTGGATGGCCGTGGTGATGGCTCAGGCATGGGCAATGCGATGGGTGGTGCGGCCGCCATGGCGGGTGGGTTCGATC
AAACGCCCCAGTACAATAATGGCCCGGCACAAAACGCCTACAATCAAGCGGCTCCTAAACCCGCAGGCAATAATCAGGGC
GGCAATCAAGGTGGTTTCGGCCAGCCAGCAAATCGCCCTGCACCGCAACAAAATGTACCGCCGCAACCTGCCGGTTTTGA
TTCATTTGATGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9NDV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.02

100

0.528
  ssb Glaesserella parasuis strain SC1401

49.744

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.12

97.949

0.462
  ssb Neisseria meningitidis MC58

46.073

97.949

0.451

Multiple sequence alignment