Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SAO46_RS08495 Genome accession   NZ_CP025395
Coordinates   1701297..1701983 (-) Length   228 a.a.
NCBI ID   WP_000692879.1    Uniprot ID   -
Organism   Staphylococcus aureus O46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696297..1706983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAO46_RS08450 (SAO46_01553) rpmA 1696886..1697170 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAO46_RS08455 (SAO46_01554) - 1697182..1697502 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAO46_RS08460 (SAO46_01555) rplU 1697508..1697816 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAO46_RS08465 (SAO46_01556) mreD 1698235..1698765 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SAO46_RS08470 (SAO46_01557) mreC 1698765..1699607 (-) 843 WP_000911032.1 rod shape-determining protein MreC -
  SAO46_RS08475 - 1699805..1699924 (-) 120 WP_000840603.1 hypothetical protein -
  SAO46_RS08480 (SAO46_01558) - 1699998..1700471 (-) 474 WP_001236737.1 DUF4930 family protein -
  SAO46_RS08485 - 1700631..1700828 (+) 198 WP_000025835.1 hypothetical protein -
  SAO46_RS08490 (SAO46_01559) - 1700945..1701229 (-) 285 WP_000171863.1 hypothetical protein -
  SAO46_RS08495 (SAO46_01560) ysxA/radC 1701297..1701983 (-) 687 WP_000692879.1 DNA repair protein RadC Machinery gene
  SAO46_RS08500 (SAO46_01561) - 1701980..1702687 (-) 708 WP_000261112.1 A24 family peptidase -
  SAO46_RS08510 (SAO46_01562) - 1702949..1704220 (-) 1272 WP_001108335.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SAO46_RS08515 (SAO46_01563) - 1704233..1706863 (-) 2631 WP_000425365.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25287.17 Da        Isoelectric Point: 6.7572

>NTDB_id=218405 SAO46_RS08495 WP_000692879.1 1701297..1701983(-) (ysxA/radC) [Staphylococcus aureus O46]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHSSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=218405 SAO46_RS08495 WP_000692879.1 1701297..1701983(-) (ysxA/radC) [Staphylococcus aureus O46]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCCGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATTCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.232

98.246

0.513
  radC Streptococcus gordonii str. Challis substr. CH1

39.45

95.614

0.377
  radC Streptococcus pneumoniae TIGR4

40.566

92.982

0.377
  radC Streptococcus pneumoniae R6

40.094

92.982

0.373
  radC Streptococcus pneumoniae D39

40.094

92.982

0.373