Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BTA34_RS14990 Genome accession   NZ_CP019686
Coordinates   3363096..3363623 (+) Length   175 a.a.
NCBI ID   WP_099076296.1    Uniprot ID   -
Organism   Proteus sp. CD3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3358096..3368623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTA34_RS14985 (BTA34_14995) uvrA 3360010..3362844 (-) 2835 WP_151436250.1 excinuclease ABC subunit UvrA -
  BTA34_RS14990 (BTA34_15000) ssb 3363096..3363623 (+) 528 WP_099076296.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BTA34_RS14995 (BTA34_15005) zur 3363828..3364358 (+) 531 WP_151436251.1 zinc uptake transcriptional repressor Zur -
  BTA34_RS15000 (BTA34_15010) - 3364405..3364698 (-) 294 WP_151436252.1 type II toxin-antitoxin system RelE family toxin -
  BTA34_RS15005 (BTA34_15015) - 3364688..3364942 (-) 255 WP_023583073.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  BTA34_RS15010 (BTA34_15020) lexA 3365097..3365708 (-) 612 WP_151436253.1 transcriptional repressor LexA -
  BTA34_RS15015 (BTA34_15025) - 3365836..3366207 (-) 372 WP_151436254.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18847.89 Da        Isoelectric Point: 4.9468

>NTDB_id=217827 BTA34_RS14990 WP_099076296.1 3363096..3363623(+) (ssb) [Proteus sp. CD3]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGGQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=217827 BTA34_RS14990 WP_099076296.1 3363096..3363623(+) (ssb) [Proteus sp. CD3]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTTGCAAACCTGACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTGGTCAATATCGG
TGGCTCCATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATGGCGCACCTTCACAAGGCGGTCAAGGCGGTTGGGGTCAAC
CACAACAACCACAAGCATCACAACAATTTAGCGGTGGCGCACAATCTCGCCCTGCACAACAACCCGCAGCGGCTCCAGCA
CCAAGCAATGAACCACCAATGGACTTTGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.973

100

0.771
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497

Multiple sequence alignment