Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ERICI_RS10815 Genome accession   NZ_CP019651
Coordinates   2047819..2048772 (+) Length   317 a.a.
NCBI ID   WP_104932569.1    Uniprot ID   -
Organism   Paenibacillus larvae subsp. larvae strain ERIC_I     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2042819..2053772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERICI_RS10800 (ERICI_02244) fdhF 2043254..2046202 (+) 2949 WP_023484253.1 formate dehydrogenase subunit alpha -
  ERICI_RS10805 (ERICI_02245) - 2046205..2046696 (+) 492 WP_023484252.1 DUF1641 domain-containing protein -
  ERICI_RS10810 (ERICI_02246) fdhD 2046713..2047516 (+) 804 WP_104932614.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ERICI_RS10815 (ERICI_02247) ceuB 2047819..2048772 (+) 954 WP_104932569.1 ABC transporter permease Machinery gene
  ERICI_RS10820 (ERICI_02248) - 2048762..2049715 (+) 954 WP_024094005.1 iron chelate uptake ABC transporter family permease subunit -
  ERICI_RS10825 (ERICI_02249) - 2049709..2050467 (+) 759 WP_023484248.1 ABC transporter ATP-binding protein -
  ERICI_RS10830 (ERICI_02250) - 2050594..2051511 (+) 918 WP_023484247.1 siderophore ABC transporter substrate-binding protein -
  ERICI_RS10835 (ERICI_02252) - 2051735..2051992 (+) 258 WP_024094007.1 YqkE family protein -
  ERICI_RS10840 (ERICI_02253) - 2052023..2053162 (+) 1140 WP_046655018.1 lactonase family protein -
  ERICI_RS23515 - 2053300..2053416 (+) 117 Protein_2146 transposase -
  ERICI_RS23520 - 2053443..2053598 (+) 156 WP_162471813.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35156.46 Da        Isoelectric Point: 10.1629

>NTDB_id=217591 ERICI_RS10815 WP_104932569.1 2047819..2048772(+) (ceuB) [Paenibacillus larvae subsp. larvae strain ERIC_I]
MKLRYLFIALVILSFASVFIGVKEVSPMDMLHLGEEQVQVILISRIPRLVSIIIAGVSMSISGLIMQQISRNKFVSPTTA
GTMDFARLGILVSIMLFTTASPLVKMLVAFIFALLGTLLFMKILKRIRFKDTIFIPLVDIMFGNVVSSITTFFAYKYDLI
QNINAWLQGDFSMIIKGRYELLYLSIPIVIIAFLYANKFTVAGMGEDFSKNLGVNYNRVVNVGLVIVALVSAVVILTVGT
IPFLGLIIPNIVSIYRGDNLRNSLPHTALLGAVFVLFCDILGRIIIFPYEVSISVTVGVIGSIIFLYLLFRRNAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=217591 ERICI_RS10815 WP_104932569.1 2047819..2048772(+) (ceuB) [Paenibacillus larvae subsp. larvae strain ERIC_I]
ATGAAACTACGATACCTTTTCATAGCGCTTGTTATCTTATCTTTCGCCTCCGTTTTCATCGGGGTAAAAGAAGTTTCCCC
GATGGATATGCTTCATCTGGGGGAAGAACAGGTCCAGGTTATTCTTATTAGCCGGATTCCCCGTCTGGTCAGTATTATCA
TCGCGGGAGTCAGTATGAGCATTAGCGGTCTTATCATGCAGCAGATCAGCCGCAACAAATTTGTCTCGCCGACTACGGCC
GGAACGATGGACTTCGCCAGGCTGGGTATTCTCGTTTCGATTATGCTGTTCACCACGGCCAGTCCACTGGTGAAGATGCT
TGTAGCTTTCATCTTTGCTTTGCTGGGGACGTTATTGTTCATGAAAATCCTTAAACGGATCAGGTTCAAGGATACGATCT
TTATCCCGCTTGTCGACATCATGTTCGGGAATGTTGTAAGCTCGATCACAACTTTCTTTGCTTACAAATATGACTTGATT
CAGAATATCAATGCATGGCTTCAGGGTGATTTCTCAATGATCATTAAAGGGAGGTACGAGCTTTTATATCTTAGTATTCC
TATTGTGATCATTGCCTTTCTCTATGCCAACAAGTTTACTGTGGCGGGAATGGGAGAAGATTTCTCCAAAAACTTGGGTG
TAAACTATAACCGGGTTGTCAATGTTGGGCTCGTGATCGTAGCACTGGTCTCCGCAGTGGTAATCCTGACTGTAGGTACT
ATTCCGTTTCTTGGCTTGATTATTCCGAATATCGTTTCGATCTACAGGGGAGATAATCTGAGAAACAGTCTTCCCCACAC
AGCATTGCTTGGAGCGGTGTTCGTTCTTTTCTGTGACATTCTAGGCCGGATTATCATTTTCCCGTATGAGGTATCTATAA
GTGTTACGGTCGGAGTGATCGGAAGCATCATCTTCCTTTACTTACTATTTAGGAGAAACGCTTATGCATCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.685

0.511

Multiple sequence alignment