Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ADP71_RS08405 Genome accession   NZ_CP019644
Coordinates   1707675..1709834 (+) Length   719 a.a.
NCBI ID   WP_026353512.1    Uniprot ID   -
Organism   Vitreoscilla sp. C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1702675..1714834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS08385 (ADP71_22220) pilM 1704752..1705846 (+) 1095 WP_019958119.1 type IV pilus assembly protein PilM -
  ADP71_RS08390 (ADP71_22240) - 1705843..1706439 (+) 597 WP_019958120.1 PilN domain-containing protein -
  ADP71_RS08395 (ADP71_22270) pilO 1706442..1707128 (+) 687 WP_019958121.1 type 4a pilus biogenesis protein PilO -
  ADP71_RS08400 (ADP71_22280) - 1707125..1707652 (+) 528 WP_019958122.1 pilus assembly protein PilP -
  ADP71_RS08405 (ADP71_22300) pilQ 1707675..1709834 (+) 2160 WP_026353512.1 type IV pilus secretin PilQ Machinery gene
  ADP71_RS08410 (ADP71_22310) aroK 1709873..1710415 (+) 543 WP_336234320.1 shikimate kinase AroK -
  ADP71_RS08415 (ADP71_22320) aroB 1710390..1711472 (+) 1083 WP_171461070.1 3-dehydroquinate synthase -
  ADP71_RS08420 (ADP71_22340) - 1711631..1714339 (+) 2709 WP_019958126.1 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase -
  ADP71_RS08425 (ADP71_22350) rpsP 1714430..1714669 (+) 240 WP_019958127.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 719 a.a.        Molecular weight: 77379.47 Da        Isoelectric Point: 9.0507

>NTDB_id=217506 ADP71_RS08405 WP_026353512.1 1707675..1709834(+) (pilQ) [Vitreoscilla sp. C1]
MNMKHIQATVKLLSGLSLGLMLQTAWAGNITDIKVTSLTDNKKIVKIKFDSDVTEPKGFVTGTPPTIALDFPNTSLNLSQ
TDFAYNDSLLGKILAAETSGRSRLAIDLREGSEYYTERKGDEIWVHISSKSASPKSLTTQSEPAIKTSSAPIGNAAQLPS
NENEYAHSGVSIDFKKGSASRGEITLNLPNPKTKFDIKRLADRLIVTLPNTSISTAEQKKLDVSTFGTPVRFINLTRNNS
QTQLEIITTGGWSYQNKLENGRQVFHIIPQSNVSQAGLSSKNQKFKGSNVTLDFQNVEVRTILQILAKESGMNIVASDSV
QGSMTISLKDVPWDQALQLVLDARDLDKRQNGNIINVAPREELLSKDKRNLTAAKELEELGPLISQSFQLKYKSVEEFRT
VLNIPVSGATSTSDRNSILSSRGSALIDPATNTLIINDVISSLRKIQTLIEELDVPSQQVMVEARIVEAGTGFSRELGTR
WFGQQTHIGSSGNTATGIGAGIVGSAGNSGSNNAWAGPMNFANIPSVNLGASAPTSSIAVVRQTLSGALGLELSASEATN
KTKTISSPRVLTQNGKKAEIKSGTEIPYQEASSSGATSTSFKEAVLGLVVTPRITPDGNIIMDLDITNDSVDNSCRASEP
CISTNNLNSTVMVENGGTIIVGGIYRRSNGGVHDKVPLLGDIPVLGNLFKRQTKNDEQRELLIFITPRIMSATGTNLRY

Nucleotide


Download         Length: 2160 bp        

>NTDB_id=217506 ADP71_RS08405 WP_026353512.1 1707675..1709834(+) (pilQ) [Vitreoscilla sp. C1]
ATGAATATGAAACACATTCAAGCAACCGTTAAACTGCTCTCTGGTTTAAGCTTGGGTTTAATGCTACAAACAGCCTGGGC
AGGCAATATTACGGATATCAAAGTCACTTCTTTAACTGACAATAAAAAAATTGTCAAAATTAAGTTTGATAGCGATGTCA
CCGAACCCAAAGGTTTTGTAACAGGTACACCTCCTACTATTGCATTAGATTTTCCAAATACCAGTTTGAATTTGTCTCAG
ACGGATTTTGCCTACAATGACAGCTTGCTAGGTAAAATATTAGCCGCAGAAACCAGCGGCCGCTCTCGTTTGGCCATCGA
TTTACGCGAAGGCAGTGAATATTATACTGAACGCAAAGGCGATGAGATTTGGGTGCATATCAGTTCTAAAAGTGCATCAC
CAAAAAGCTTGACTACCCAAAGTGAGCCAGCCATTAAAACATCCAGTGCTCCTATTGGCAATGCTGCACAACTGCCCTCT
AATGAAAATGAATATGCTCACAGCGGCGTTAGCATAGACTTCAAAAAAGGCTCAGCTAGCCGTGGTGAAATTACTTTAAA
TCTACCTAATCCAAAAACCAAATTTGATATCAAACGCTTAGCCGACCGTCTAATTGTGACCTTGCCAAATACCAGCATTA
GTACTGCTGAGCAAAAGAAATTGGATGTTTCTACATTTGGTACACCTGTTCGTTTCATTAACTTGACTCGCAACAACTCA
CAAACCCAATTGGAAATCATAACTACTGGTGGCTGGTCATACCAAAACAAATTGGAGAATGGTCGTCAAGTATTCCACAT
CATTCCTCAAAGCAATGTGAGCCAAGCTGGTTTAAGCTCTAAAAACCAAAAATTCAAAGGCAGCAATGTCACTTTGGACT
TCCAAAATGTCGAAGTGCGCACCATCTTGCAAATTTTGGCCAAAGAATCAGGTATGAATATTGTTGCCAGTGACTCTGTT
CAAGGCAGCATGACCATCAGCTTAAAAGACGTGCCTTGGGATCAAGCATTACAATTGGTTTTAGATGCCCGCGATTTAGA
CAAACGTCAAAATGGCAACATCATTAATGTAGCGCCTCGCGAAGAACTATTGTCTAAAGACAAGCGTAATTTGACTGCCG
CCAAAGAATTGGAAGAGCTGGGTCCATTGATTTCACAGTCTTTCCAATTAAAATATAAGAGTGTGGAAGAATTCCGTACA
GTTTTGAATATTCCAGTTAGCGGTGCAACCAGTACCAGTGATCGTAACTCTATTTTATCTAGCCGTGGTTCAGCATTAAT
TGATCCTGCAACTAACACACTTATCATTAATGATGTGATTTCATCTTTGCGTAAAATTCAAACTCTAATTGAAGAATTAG
ATGTTCCTTCGCAACAAGTTATGGTTGAAGCTCGAATTGTTGAAGCTGGTACAGGTTTCTCTCGTGAGCTAGGTACTCGT
TGGTTTGGTCAACAAACTCACATAGGCTCTAGCGGCAACACTGCTACAGGGATTGGTGCAGGTATTGTTGGCTCCGCAGG
CAACTCAGGTTCCAATAATGCATGGGCAGGCCCAATGAATTTTGCTAATATTCCTAGCGTTAATTTAGGTGCCAGCGCTC
CAACCAGCAGCATCGCAGTGGTACGCCAAACATTGTCAGGTGCTTTAGGCTTAGAATTATCCGCATCCGAAGCGACTAAC
AAAACCAAAACCATTTCTAGCCCACGTGTTTTAACACAAAACGGCAAAAAAGCAGAAATCAAATCTGGTACCGAAATTCC
TTACCAAGAGGCCAGCTCAAGTGGCGCAACCTCTACTTCATTTAAAGAAGCTGTATTGGGATTAGTAGTCACGCCTCGTA
TTACGCCAGATGGCAATATCATTATGGATTTGGATATTACCAATGACTCAGTTGATAACAGCTGCCGCGCGTCTGAACCA
TGTATTTCTACCAACAATTTGAACAGTACAGTCATGGTTGAAAATGGTGGAACTATTATTGTCGGTGGTATTTATCGTCG
AAGTAATGGTGGCGTACATGATAAAGTGCCTTTATTGGGTGATATTCCAGTATTGGGCAATTTATTCAAACGTCAAACCA
AAAACGATGAGCAACGTGAATTGTTGATTTTCATCACACCTCGCATCATGAGCGCGACAGGTACAAACTTGCGTTATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(313-357)

Bacterial type II and III secretion system protein (Secretin)

(556-710)

Bacterial type II/III secretion system short domain (Secretin_N)

(386-459)

AMIN domain (AMIN)

(40-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

45.887

100

0.497
  pilQ Neisseria gonorrhoeae strain FA1090

47.767

100

0.491
  pilQ Neisseria meningitidis MC58

51.872

78.025

0.405

Multiple sequence alignment