Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ADP71_RS08055 Genome accession   NZ_CP019644
Coordinates   1643934..1644497 (-) Length   187 a.a.
NCBI ID   WP_171461058.1    Uniprot ID   -
Organism   Vitreoscilla sp. C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1638934..1649497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS08030 (ADP71_21200) ftsH 1639702..1641723 (-) 2022 WP_051082998.1 ATP-dependent zinc metalloprotease FtsH -
  ADP71_RS08035 (ADP71_21210) - 1641794..1642414 (-) 621 WP_104931951.1 RlmE family RNA methyltransferase -
  ADP71_RS08040 (ADP71_21220) yhbY 1642490..1642771 (+) 282 WP_019958049.1 ribosome assembly RNA-binding protein YhbY -
  ADP71_RS08045 (ADP71_21230) - 1642831..1643271 (-) 441 WP_019958050.1 DUF4149 domain-containing protein -
  ADP71_RS08050 (ADP71_21240) greA 1643321..1643797 (-) 477 WP_019958051.1 transcription elongation factor GreA -
  ADP71_RS08055 (ADP71_21250) ssb 1643934..1644497 (-) 564 WP_171461058.1 single-stranded DNA-binding protein Machinery gene
  ADP71_RS08060 (ADP71_21260) - 1644563..1645759 (-) 1197 WP_019958053.1 MFS transporter -
  ADP71_RS08065 (ADP71_21280) - 1645761..1646372 (-) 612 WP_019958054.1 lytic transglycosylase domain-containing protein -
  ADP71_RS08070 (ADP71_21290) pyrC 1646383..1647429 (-) 1047 WP_019958055.1 dihydroorotase -
  ADP71_RS08075 (ADP71_21300) - 1647509..1647736 (-) 228 WP_019958056.1 sulfurtransferase TusA family protein -
  ADP71_RS08080 (ADP71_21310) - 1647858..1648445 (+) 588 WP_019958057.1 CNP1-like family protein -
  ADP71_RS08085 (ADP71_21320) - 1648464..1649240 (+) 777 WP_171461059.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20361.43 Da        Isoelectric Point: 5.8282

>NTDB_id=217505 ADP71_RS08055 WP_171461058.1 1643934..1644497(-) (ssb) [Vitreoscilla sp. C1]
MSVNKVILVGRLGKDPEVRYMTNGEAVTNFGVATSESWKGRDGQKQERTEWHNVTLYRKLAEIAGQYLKKGSQVYIEGKI
QSRKYMGKDGIERTAYEIVGSEMKMLGGRSDASSSSYDDGMSAPYEDNSSQYSGASHSGSYGSGNQYASNAGSPAAPARQ
EVPAAPSRSMNQPPKVEVDDLNDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=217505 ADP71_RS08055 WP_171461058.1 1643934..1644497(-) (ssb) [Vitreoscilla sp. C1]
ATGTCTGTAAATAAAGTGATTTTAGTGGGCCGCTTGGGAAAAGATCCTGAAGTGCGTTACATGACCAATGGTGAGGCAGT
GACCAATTTTGGTGTGGCCACCAGCGAGTCTTGGAAAGGCCGCGATGGTCAAAAACAAGAGCGTACGGAGTGGCACAATG
TGACTTTGTATCGCAAATTGGCAGAAATTGCAGGCCAATATTTGAAAAAAGGCAGCCAAGTTTACATCGAAGGTAAAATT
CAAAGCCGTAAATACATGGGTAAAGATGGCATTGAGCGCACAGCTTATGAAATCGTAGGCTCAGAAATGAAAATGTTAGG
TGGTCGCTCTGATGCATCATCGTCTTCTTACGATGATGGTATGAGTGCACCTTATGAAGACAATAGCAGCCAATACAGTG
GTGCTAGTCATTCAGGTTCTTATGGCAGTGGCAATCAATATGCTTCTAATGCAGGTAGCCCAGCTGCACCAGCGCGCCAA
GAAGTGCCTGCTGCACCAAGTCGCTCTATGAACCAGCCACCTAAAGTTGAGGTGGACGATTTGAATGATGATATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

60.938

100

0.626
  ssb Neisseria gonorrhoeae MS11

58.511

100

0.588
  ssb Vibrio cholerae strain A1552

44.162

100

0.465
  ssb Glaesserella parasuis strain SC1401

40.86

99.465

0.406

Multiple sequence alignment