Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | lmo0045 | Genome accession | NC_003210 |
| Coordinates | 49934..50470 (+) | Length | 178 a.a. |
| NCBI ID | NP_463578.1 | Uniprot ID | - |
| Organism | Listeria monocytogenes EGD-e | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 44934..55470
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| lmo0040 | - | 45325..46434 (+) | 1110 | NP_463573.1 | agmatine deiminase | - |
| lmo0041 | - | 46451..47230 (+) | 780 | NP_463574.1 | hypothetical protein | - |
| lmo0042 | - | 47335..47994 (+) | 660 | NP_463575.1 | DedA protein | - |
| lmo0043 | - | 48074..49306 (+) | 1233 | NP_463576.1 | arginine deiminase | - |
| lmo0044 | rpsF | 49585..49878 (+) | 294 | NP_463577.1 | 30S ribosomal protein S6 | - |
| lmo0045 | ssbA | 49934..50470 (+) | 537 | NP_463578.1 | single-strand binding protein | Machinery gene |
| lmo0046 | rpsR | 50514..50753 (+) | 240 | NP_463579.1 | 30S ribosomal protein S18 | - |
| lmo0047 | - | 50907..51518 (+) | 612 | NP_463580.1 | hypothetical protein | - |
| lmo0048 | - | 51775..52389 (+) | 615 | NP_463581.1 | sensor histidine kinase AgrB | - |
| lmo0049 | - | 52373..52534 (+) | 162 | NP_463582.1 | hypothetical protein | - |
| lmo0050 | - | 52630..53925 (+) | 1296 | NP_463583.1 | histidine kinase | - |
| lmo0051 | - | 53944..54672 (+) | 729 | NP_463584.1 | response regulator | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19493.14 Da Isoelectric Point: 4.7306
>NTDB_id=21747 lmo0045 NP_463578.1 49934..50470(+) (ssbA) [Listeria monocytogenes EGD-e]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF
Nucleotide
Download Length: 537 bp
>NTDB_id=21747 lmo0045 NP_463578.1 49934..50470(+) (ssbA) [Listeria monocytogenes EGD-e]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTACAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAATAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTACAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAATAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
68.539 |
100 |
0.685 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.618 |
100 |
0.556 |
| ssb | Glaesserella parasuis strain SC1401 |
35.484 |
100 |
0.371 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
59.551 |
0.365 |