Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CW750_RS06970 Genome accession   NZ_CP025136
Coordinates   1413459..1415462 (+) Length   667 a.a.
NCBI ID   WP_094365654.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1408459..1420462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS06950 (CW750_06945) - 1409230..1409577 (+) 348 WP_229295513.1 hypothetical protein -
  CW750_RS06955 (CW750_06950) trxB 1409694..1410614 (+) 921 WP_076647535.1 thioredoxin-disulfide reductase -
  CW750_RS06960 (CW750_06955) - 1410770..1412494 (+) 1725 WP_076647532.1 phospho-sugar mutase -
  CW750_RS06965 (CW750_06960) - 1412619..1413251 (+) 633 WP_016264744.1 YfbR-like 5'-deoxynucleotidase -
  CW750_RS06970 (CW750_06965) uvrB 1413459..1415462 (+) 2004 WP_094365654.1 excinuclease ABC subunit UvrB Machinery gene
  CW750_RS06975 (CW750_06970) uvrA 1415472..1418324 (+) 2853 WP_061827221.1 excinuclease ABC subunit UvrA Machinery gene
  CW750_RS06980 (CW750_06975) - 1418446..1418982 (+) 537 WP_016264747.1 DUF308 domain-containing protein -
  CW750_RS06985 (CW750_06980) rapZ 1419108..1419992 (+) 885 WP_011374234.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 76387.66 Da        Isoelectric Point: 4.6130

>NTDB_id=217416 CW750_RS06970 WP_094365654.1 1413459..1415462(+) (uvrB) [Latilactobacillus sakei strain WiKim0072]
MIDRQNDNLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLIISHNKTLAGQLYA
EFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYQ
NHVLSLRPGMEVERNDLLRQLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVI
GERSHVAIFPATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCSGIENYSRHMED
RQAGEPPYTLLDFFPKDSIMMIDESHVTMPQIRGMYNGDRARKQMLIDYGFRLPSALDNRPLTLPEFEEHVNEIMYVSAT
PGPYEAEQTDIQVDQIIRPTGLLDPNIEVRPIMGQIDDLVGEINDRIEKNERVFITTLTKKMSEDLTDYLKELGIKVRYL
HSDVKTLERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRASRNEHGQVLLYADK
ITDSMRHAIDETKRRRTIQEDYNTAHNITPKTIIKPIRDAISMVQSVEHPEEIKMTNEIDLENMSKAEKLEMVERLSEQM
RLAAKKLDFEQAATLRDTILELKSEID

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=217416 CW750_RS06970 WP_094365654.1 1413459..1415462(+) (uvrB) [Latilactobacillus sakei strain WiKim0072]
ATGATTGATAGACAGAACGATAACCTATTTGACTTAGTCGCACCATATGAACCTGCTGGCGATCAACCTGCTGCAATTGA
AACCTTAACGAAGAATTTTGAGGCAGGTGCTAAGGCCCAGGTCTTGATGGGCGCTACTGGGACCGGGAAAACTTTTACAA
TGTCCAACGTGATTAAGAATCTCAACAAACCAACGTTGATTATTTCGCATAATAAGACATTGGCCGGTCAATTATACGCG
GAATTTAAGCAGTTTTTCCCTAACAATGCGGTTGAATATTTCGTGAGTTATTATGATTACTACCAACCAGAAGCCTATGT
GCCTTCCAGTGATACGTATATCGAAAAAGATTCGAGTATTAATGATGAAATCGATAAACTACGGCATTCAGCGACGAGTT
CGTTATTAGAACGCAACGATGTGATTGTTGTGGCCTCTGTTTCTTGTATCTTTGGGTTAGGGGATCCACGCGAATACCAA
AATCACGTCTTGTCACTGCGTCCAGGAATGGAAGTTGAACGTAACGACCTATTACGTCAGTTAGTTGATATTCAATTTGA
ACGTAACGATATAGATTTTCAACGGGGGCGCTTTAGAGTGCGCGGTGATGTGGTTGAAATTTTCCCAGCTTCTCGTGATG
ATCATGCGCTGCGCGTTGAATTTTTTGGCGATGAAATTGATCGAATTGTCGAAGTGGATGCTTTAACGGGTGAAGTGATT
GGCGAACGGTCGCACGTTGCCATTTTCCCCGCAACGCATTTTATGACGAATGATGAAAAAATGGAAAAAGCGATTGAAAG
TATTAAAGCTGAACTTGCCGAACGGCTAGCTGTTTTAAAAGGCGAGGGTAAGTTACTAGAAGCACAACGCCTTGAACAAC
GAACAAACTATGACCTTGAAATGATGCAAGAAATGGGTTATTGTTCTGGGATTGAAAATTACTCACGCCATATGGAAGAT
CGCCAAGCCGGCGAACCGCCTTACACGTTGCTGGATTTCTTCCCAAAGGATTCAATCATGATGATCGATGAATCCCATGT
CACTATGCCCCAAATTCGGGGGATGTACAACGGTGATCGTGCGCGGAAACAAATGTTGATTGACTATGGTTTCCGGTTAC
CAAGTGCGTTAGATAACCGCCCATTAACGTTGCCAGAATTCGAAGAGCATGTGAATGAAATTATGTATGTGTCGGCCACA
CCAGGGCCTTACGAAGCGGAACAAACCGATATTCAAGTGGATCAGATTATTCGACCAACCGGCCTGTTGGATCCCAATAT
TGAAGTCCGACCAATTATGGGCCAGATTGACGATTTAGTCGGTGAGATCAATGACCGCATTGAAAAGAACGAACGGGTCT
TCATTACAACTTTAACCAAGAAGATGTCGGAAGATTTAACCGATTATCTCAAGGAACTGGGGATCAAAGTCCGGTACTTG
CACAGTGATGTCAAGACGTTGGAACGAACGGAAATTATCCGTGATTTACGACTGGGCAAGTTTGATGTCTTAATTGGGAT
TAACTTATTACGGGAAGGGATCGATGTCCCTGAAGTGTCGTTAGTGGCGATTTTAGACGCGGATAAGGAAGGCTTCTTAC
GGAGTGAACGTTCCTTAATCCAAACCATTGGCCGGGCATCTCGTAATGAACATGGGCAAGTCTTGTTGTACGCCGATAAG
ATTACGGATTCAATGCGTCACGCAATTGATGAAACTAAACGTCGACGGACAATTCAAGAAGACTACAATACAGCTCACAA
CATCACACCGAAGACGATTATTAAACCAATTAGAGATGCGATTTCAATGGTTCAATCAGTTGAACATCCAGAAGAAATTA
AGATGACCAATGAGATTGATCTAGAGAACATGTCGAAGGCTGAAAAACTAGAAATGGTTGAACGACTATCCGAACAGATG
CGCTTAGCAGCTAAGAAACTTGATTTCGAACAAGCGGCGACATTGCGGGATACCATTTTAGAATTAAAAAGTGAAATAGA
TTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

UvrB/uvrC motif (UVR)

(631-664)

Type III restriction enzyme, res subunit (ResIII)

(21-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

72.59

99.55

0.723
  uvrB Streptococcus pneumoniae D39

72.59

99.55

0.723
  uvrB Streptococcus pneumoniae TIGR4

72.44

99.55

0.721