Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BZ167_RS12465 Genome accession   NZ_CP019626
Coordinates   2573611..2574087 (+) Length   158 a.a.
NCBI ID   WP_269465503.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2568611..2579087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS12440 (BZ167_12485) degS 2568682..2569845 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BZ167_RS12445 (BZ167_12490) degU 2569922..2570611 (+) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  BZ167_RS12450 (BZ167_12495) - 2570709..2571557 (+) 849 WP_061860921.1 DegV family protein -
  BZ167_RS12455 (BZ167_12500) comFA 2571665..2573050 (+) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  BZ167_RS12460 (BZ167_12505) - 2573108..2573392 (+) 285 WP_003151389.1 competence protein ComFB -
  BZ167_RS20610 - 2573410..2573568 (+) 159 Protein_2394 double zinc ribbon domain-containing protein -
  BZ167_RS12465 (BZ167_12510) comFC 2573611..2574087 (+) 477 WP_269465503.1 phosphoribosyltransferase family protein Machinery gene
  BZ167_RS12470 (BZ167_12515) - 2574161..2574580 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BZ167_RS12475 (BZ167_12520) flgM 2574650..2574916 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BZ167_RS12480 (BZ167_12525) - 2574931..2575413 (+) 483 WP_003151394.1 flagellar protein FlgN -
  BZ167_RS12485 (BZ167_12530) flgK 2575429..2576946 (+) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  BZ167_RS12490 (BZ167_12535) flgL 2576958..2577875 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BZ167_RS12495 (BZ167_12540) - 2577966..2578535 (+) 570 WP_007407476.1 DUF6470 family protein -
  BZ167_RS12500 (BZ167_12545) fliW 2578565..2578996 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17473.08 Da        Isoelectric Point: 10.2452

>NTDB_id=217365 BZ167_RS12465 WP_269465503.1 2573611..2574087(+) (comFC) [Bacillus sp. 275]
MLRQNRSVYLYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNKHTLIPIPLSGERLAERGFNQSELLASLLGM
PVIFPLIRLNNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 477 bp        

>NTDB_id=217365 BZ167_RS12465 WP_269465503.1 2573611..2574087(+) (comFC) [Bacillus sp. 275]
TTGCTGCGGCAAAACCGTTCGGTATATTTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGA
TGCGAAAATCATTCAAGCATTTGAACGTGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATAAACATACTCTCA
TCCCTATTCCGCTGAGCGGCGAACGGCTGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATG
CCCGTCATTTTCCCCCTCATCCGACTGAACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAA
AAAGTTTTCAGCAGCCGAAAACTCCGCCGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACAC
TTCACCAAGCCGCCGAAGTCCTGCTGACAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(73-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

67.089

100

0.671

Multiple sequence alignment