Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BZ167_RS12455 Genome accession   NZ_CP019626
Coordinates   2571665..2573050 (+) Length   461 a.a.
NCBI ID   WP_061860920.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2566665..2578050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS12435 (BZ167_12480) - 2567812..2568459 (-) 648 WP_007407485.1 YigZ family protein -
  BZ167_RS12440 (BZ167_12485) degS 2568682..2569845 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BZ167_RS12445 (BZ167_12490) degU 2569922..2570611 (+) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  BZ167_RS12450 (BZ167_12495) - 2570709..2571557 (+) 849 WP_061860921.1 DegV family protein -
  BZ167_RS12455 (BZ167_12500) comFA 2571665..2573050 (+) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  BZ167_RS12460 (BZ167_12505) - 2573108..2573392 (+) 285 WP_003151389.1 competence protein ComFB -
  BZ167_RS20610 - 2573410..2573568 (+) 159 Protein_2394 double zinc ribbon domain-containing protein -
  BZ167_RS12465 (BZ167_12510) comFC 2573611..2574087 (+) 477 WP_269465503.1 phosphoribosyltransferase family protein Machinery gene
  BZ167_RS12470 (BZ167_12515) - 2574161..2574580 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BZ167_RS12475 (BZ167_12520) flgM 2574650..2574916 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BZ167_RS12480 (BZ167_12525) - 2574931..2575413 (+) 483 WP_003151394.1 flagellar protein FlgN -
  BZ167_RS12485 (BZ167_12530) flgK 2575429..2576946 (+) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  BZ167_RS12490 (BZ167_12535) flgL 2576958..2577875 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52528.86 Da        Isoelectric Point: 9.9923

>NTDB_id=217364 BZ167_RS12455 WP_061860920.1 2571665..2573050(+) (comFA) [Bacillus sp. 275]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGQLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFCGDVVMFHFGMTNGMKQAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=217364 BZ167_RS12455 WP_061860920.1 2571665..2573050(+) (comFA) [Bacillus sp. 275]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCTTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCCGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCAACTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCTGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAACAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(327-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.478

99.783

0.633

Multiple sequence alignment