Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BZ167_RS12445 Genome accession   NZ_CP019626
Coordinates   2569922..2570611 (+) Length   229 a.a.
NCBI ID   WP_061860922.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2564922..2575611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS12425 (BZ167_12470) - 2565418..2566494 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  BZ167_RS12430 (BZ167_12475) - 2566593..2567807 (-) 1215 WP_015418337.1 LCP family protein -
  BZ167_RS12435 (BZ167_12480) - 2567812..2568459 (-) 648 WP_007407485.1 YigZ family protein -
  BZ167_RS12440 (BZ167_12485) degS 2568682..2569845 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BZ167_RS12445 (BZ167_12490) degU 2569922..2570611 (+) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  BZ167_RS12450 (BZ167_12495) - 2570709..2571557 (+) 849 WP_061860921.1 DegV family protein -
  BZ167_RS12455 (BZ167_12500) comFA 2571665..2573050 (+) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  BZ167_RS12460 (BZ167_12505) - 2573108..2573392 (+) 285 WP_003151389.1 competence protein ComFB -
  BZ167_RS20610 - 2573410..2573568 (+) 159 Protein_2394 double zinc ribbon domain-containing protein -
  BZ167_RS12465 (BZ167_12510) comFC 2573611..2574087 (+) 477 WP_269465503.1 phosphoribosyltransferase family protein Machinery gene
  BZ167_RS12470 (BZ167_12515) - 2574161..2574580 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BZ167_RS12475 (BZ167_12520) flgM 2574650..2574916 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BZ167_RS12480 (BZ167_12525) - 2574931..2575413 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25894.62 Da        Isoelectric Point: 5.9446

>NTDB_id=217363 BZ167_RS12445 WP_061860922.1 2569922..2570611(+) (degU) [Bacillus sp. 275]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSVHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=217363 BZ167_RS12445 WP_061860922.1 2569922..2570611(+) (degU) [Bacillus sp. 275]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGTTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment