Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CWI26_RS03050 Genome accession   NZ_CP025043
Coordinates   594859..595509 (+) Length   216 a.a.
NCBI ID   WP_024376704.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 589859..600509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS03020 (CWI26_03020) amiE 590309..591043 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  CWI26_RS03025 (CWI26_03025) - 591173..592021 (+) 849 WP_024378968.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  CWI26_RS03030 (CWI26_03030) - 592264..592404 (+) 141 WP_079267632.1 YSIRK-type signal peptide-containing protein -
  CWI26_RS03035 (CWI26_03035) - 592364..592930 (+) 567 WP_158293390.1 hypothetical protein -
  CWI26_RS03040 (CWI26_03040) - 592984..593676 (+) 693 WP_024409756.1 hypothetical protein -
  CWI26_RS03045 (CWI26_03045) - 593929..594630 (-) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  CWI26_RS03050 (CWI26_03050) scnR 594859..595509 (+) 651 WP_024376704.1 response regulator transcription factor Regulator
  CWI26_RS03055 (CWI26_03055) - 595511..596881 (+) 1371 WP_024376705.1 sensor histidine kinase -
  CWI26_RS03060 (CWI26_03060) - 597479..598030 (+) 552 WP_024418639.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CWI26_RS03065 (CWI26_03065) - 598239..599147 (-) 909 WP_099776502.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24768.88 Da        Isoelectric Point: 4.6866

>NTDB_id=216601 CWI26_RS03050 WP_024376704.1 594859..595509(+) (scnR) [Streptococcus suis strain AH681]
MSRILVVEDDIVISQVVCEFLKEYGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=216601 CWI26_RS03050 WP_024376704.1 594859..595509(+) (scnR) [Streptococcus suis strain AH681]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAATATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGTGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTAACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTTGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38