Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BWR56_RS06665 Genome accession   NZ_CP019562
Coordinates   1377480..1379438 (-) Length   652 a.a.
NCBI ID   WP_076984695.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372480..1384438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS06655 (BWR56_1320) - 1375066..1376232 (-) 1167 WP_076984693.1 MalY/PatB family protein -
  BWR56_RS06660 (BWR56_1321) - 1376240..1377334 (-) 1095 WP_076984694.1 cystathionine gamma-synthase -
  BWR56_RS06665 (BWR56_1322) amiA 1377480..1379438 (-) 1959 WP_076984695.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS06670 (BWR56_1323) - 1379641..1381263 (-) 1623 WP_076984898.1 putative polysaccharide biosynthesis protein -
  BWR56_RS06675 (BWR56_1324) - 1381369..1382814 (+) 1446 WP_076984696.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  BWR56_RS06680 (BWR56_1325) - 1382850..1383050 (-) 201 WP_000051185.1 CsbD family protein -
  BWR56_RS06685 (BWR56_1326) - 1383153..1383803 (-) 651 WP_076984697.1 DUF1803 domain-containing protein -
  BWR56_RS06690 (BWR56_1327) - 1383787..1384299 (-) 513 WP_076984698.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72822.97 Da        Isoelectric Point: 4.7326

>NTDB_id=216328 BWR56_RS06665 WP_076984695.1 1377480..1379438(-) (amiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MKKSKAKYLTLASVVLSAGILLSACGNSSSASKTYNYVYSSDPSSLNYLAENRATTTDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVTVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEVQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=216328 BWR56_RS06665 WP_076984695.1 1377480..1379438(-) (amiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTTCTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACTACCGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATATGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACTTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACAGTTCAGTATACTTTGACACGTCCAGAACCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCCTAAAATCAAAAGGGGATGATTTTGGTAAGGTAGATCCTTCTAGTATTTTGTATA
GTGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATCGAATACAAGAAAAATCCAAATTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACTTACTATGATGGTAGTGACCAAGATGCCCTAGCTCGTAACTTCGTAGAAGG
AGTATACAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACGTCTAAATCCTCA
GATATTGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCAACATTTGTAA
GTATCAACGGAAAAGACTTTGGTGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTAACAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGCTATCAACAGATGATTTTGACAAC
TCTAGCTACCTAGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGATCC
ATCAAGCTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCGGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGAACCAGCAAAACGT
TATGAAAAATATGCTGAAGTTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCGAAAGAAAAATGGCTAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.383

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

56.146

100

0.567
  amiA3 Streptococcus thermophilus LMD-9

55.842

100

0.564

Multiple sequence alignment