Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BWR56_RS01515 Genome accession   NZ_CP019562
Coordinates   309374..311335 (+) Length   653 a.a.
NCBI ID   WP_076984311.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 304374..316335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS01505 (BWR56_0292) - 305479..307089 (+) 1611 WP_076984310.1 glycoside hydrolase family 13 protein -
  BWR56_RS01510 (BWR56_0293) amiA 307259..309226 (+) 1968 WP_053091803.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS01515 (BWR56_0294) amiA3 309374..311335 (+) 1962 WP_076984311.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS01520 (BWR56_0295) - 311530..312975 (+) 1446 WP_049504887.1 LCP family protein -
  BWR56_RS01525 (BWR56_0296) cps4B 312977..313708 (+) 732 WP_076984312.1 capsular polysaccharide biosynthesis protein Cps4B -
  BWR56_RS01530 (BWR56_0297) cpsC 313717..314409 (+) 693 WP_061421400.1 capsular polysaccharide biosynthesis protein CpsC -
  BWR56_RS01535 (BWR56_0298) - 314419..315111 (+) 693 WP_076984313.1 tyrosine-protein kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73028.36 Da        Isoelectric Point: 4.7970

>NTDB_id=216305 BWR56_RS01515 WP_076984311.1 309374..311335(+) (amiA3) [Streptococcus oralis strain S.MIT/ORALIS-351]
MIKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFSFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDIYTKLLKEADVENEDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEAESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=216305 BWR56_RS01515 WP_076984311.1 309374..311335(+) (amiA3) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGATCAAAATGAAAAAAAGACTAATCGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCTGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTTCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTCGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTCTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACAGCTGACGG
TGAGGAATATGCTTCAGTTAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCGGACAACAAGGGGCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTCGGTGTCAAA
GCCTTGGATGATTACACAGTCGAGTACACTTTGACTCGACCAGAACCATATTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAATG
GTCCATATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAGGACAATATCGTCTATA
GCTTACAAGACAAGACATCTTGGTATTTTAGCTTTAACGTCAACCGTAAAACCTATAATCATACCGCTAAAACAACGGAC
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAAGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTGGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCCGGTATCAATTTGGCA
GATGCTCAAGATGCATACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTAGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCAACAGATGACTTTGGAAATGTT
GCTTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACTGGTTTCTATCTCAAAATTTTTGGTCTTGATGCCAAGGAAGACCAAGAAC
TCATTAAGAGTTTGGGGCTCGATATCTATACGAAACTTCTAAAAGAAGCAGATGTTGAGAACGAAGATGTTGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGACGAAGCTAAGGCTAAGTGGGAAGCAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.446

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

51.294

100

0.516
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.508

Multiple sequence alignment