Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BWR56_RS01510 Genome accession   NZ_CP019562
Coordinates   307259..309226 (+) Length   655 a.a.
NCBI ID   WP_053091803.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 302259..314226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS01495 (BWR56_0290) - 303265..303747 (-) 483 WP_000032545.1 S-ribosylhomocysteine lyase -
  BWR56_RS01500 (BWR56_0291) - 303842..305326 (-) 1485 WP_076984309.1 DUF1846 domain-containing protein -
  BWR56_RS01505 (BWR56_0292) - 305479..307089 (+) 1611 WP_076984310.1 glycoside hydrolase family 13 protein -
  BWR56_RS01510 (BWR56_0293) amiA 307259..309226 (+) 1968 WP_053091803.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS01515 (BWR56_0294) amiA3 309374..311335 (+) 1962 WP_076984311.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS01520 (BWR56_0295) - 311530..312975 (+) 1446 WP_049504887.1 LCP family protein -
  BWR56_RS01525 (BWR56_0296) cps4B 312977..313708 (+) 732 WP_076984312.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72453.95 Da        Isoelectric Point: 5.0129

>NTDB_id=216304 BWR56_RS01510 WP_053091803.1 307259..309226(+) (amiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=216304 BWR56_RS01510 WP_053091803.1 307259..309226(+) (amiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCCGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATATTAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTATACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACGGC
AACCATGCTTCCGGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACTCCATCGGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATCGAGTATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGAGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCGACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTATAATAAAACAGCTAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGATCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCGCATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCACAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCCGTTGAACAAACAGATGTAATCGCGGTTCAACAAACTAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTTGATGTCCTTCAAATGACCGATAATGAGAAAATA
AGCATTACGTCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCACTCGTGGAAAAGATC
CAGAAGTGATGGCTCAAGTCGGTCTAGACGAATACAAGAAACTCTTGGATGATGCCGCAGCTGAAACAAGCGACCTCAAT
AAGCGTTACGAAAAATACGCTAAAGCGCAAGCTTGGGTATCTGATAGTTCGCTTTTGATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAATTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAGACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54

Multiple sequence alignment