Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BZG29_RS00250 Genome accession   NZ_CP019510
Coordinates   58195..58704 (-) Length   169 a.a.
NCBI ID   WP_034781209.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 53195..63704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS00220 (BZG29_00220) - 53204..53635 (-) 432 WP_150130774.1 hypothetical protein -
  BZG29_RS00225 (BZG29_00225) - 53746..54009 (-) 264 WP_150130775.1 hypothetical protein -
  BZG29_RS00230 (BZG29_00230) - 54400..54816 (+) 417 WP_077398176.1 hypothetical protein -
  BZG29_RS00235 (BZG29_00235) - 54915..56156 (-) 1242 WP_077398177.1 glycosyltransferase family 39 protein -
  BZG29_RS00240 (BZG29_00240) - 56156..56521 (-) 366 WP_077398178.1 hypothetical protein -
  BZG29_RS00245 (BZG29_00245) - 56518..57969 (-) 1452 WP_077398179.1 UbiA family prenyltransferase -
  BZG29_RS00250 (BZG29_00250) ssb 58195..58704 (-) 510 WP_034781209.1 single-stranded DNA-binding protein Machinery gene
  BZG29_RS00255 (BZG29_00255) uvrA 59086..61935 (+) 2850 WP_077398180.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18092.27 Da        Isoelectric Point: 5.9466

>NTDB_id=216084 BZG29_RS00250 WP_034781209.1 58195..58704(-) (ssb) [Janthinobacterium sp. LM6]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGYEAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=216084 BZG29_RS00250 WP_034781209.1 58195..58704(-) (ssb) [Janthinobacterium sp. LM6]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGC
CGCCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGCGGTGGCGGCGGCTACGAAGCCC
CGGCCCCGCGCCAGGCACCGGCCCCGCGTCCGGCACCAGCCCCGGCGCCACGTCCGGCACCGAAGCCGGCACCGAACTTC
TCGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

52.273

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.544
  ssb Neisseria gonorrhoeae MS11

51.685

100

0.544
  ssb Vibrio cholerae strain A1552

50.838

100

0.538

Multiple sequence alignment