Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   BZG34_RS05500 Genome accession   NZ_CP019467
Coordinates   931461..932075 (-) Length   204 a.a.
NCBI ID   WP_012503479.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain RIVM0640     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 926461..937075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG34_RS05465 (BZG34_05430) dapC 926477..927664 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  BZG34_RS05470 (BZG34_05435) dut 927736..928188 (-) 453 WP_003701071.1 dUTP diphosphatase -
  BZG34_RS05475 (BZG34_05440) - 928354..929065 (+) 712 Protein_953 AzlC family ABC transporter permease -
  BZG34_RS05480 (BZG34_05445) - 929062..929370 (+) 309 WP_003706588.1 AzlD family protein -
  BZG34_RS05485 (BZG34_05450) pilL 929440..929913 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  BZG34_RS05490 (BZG34_05455) pilK 929915..930523 (-) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BZG34_RS05495 (BZG34_05460) pilJ 930502..931464 (-) 963 WP_047921846.1 PilW family protein Machinery gene
  BZG34_RS05500 (BZG34_05465) pilI 931461..932075 (-) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  BZG34_RS05505 (BZG34_05470) pilH 932107..932769 (-) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BZG34_RS05510 (BZG34_05475) dnaB 933026..934429 (-) 1404 WP_012503477.1 replicative DNA helicase -
  BZG34_RS05520 (BZG34_05485) - 934593..935174 (+) 582 WP_003690895.1 superoxide dismutase -
  BZG34_RS05530 (BZG34_05495) - 935406..935915 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  BZG34_RS05535 (BZG34_05500) - 936245..936577 (-) 333 WP_003687908.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22099.99 Da        Isoelectric Point: 4.9673

>NTDB_id=216012 BZG34_RS05500 WP_012503479.1 931461..932075(-) (pilI) [Neisseria gonorrhoeae strain RIVM0640]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGPYTPTPSGGDFKLNNNNLISKKDLAKAQLDRFDYELRNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDNKA
NGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGHE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=216012 BZG34_RS05500 WP_012503479.1 931461..932075(-) (pilI) [Neisseria gonorrhoeae strain RIVM0640]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCCGTACACCCCCACTCCCTCTGGCGGCGATTTCAAGCTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGATTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATT
ACGCCGTCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGT
GAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCATGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria meningitidis 8013

84.135

100

0.858

Multiple sequence alignment