Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | BZG34_RS05495 | Genome accession | NZ_CP019467 |
| Coordinates | 930502..931464 (-) | Length | 320 a.a. |
| NCBI ID | WP_047921846.1 | Uniprot ID | A0AA44ZGD9 |
| Organism | Neisseria gonorrhoeae strain RIVM0640 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 878625..939819 | 930502..931464 | within | 0 |
Gene organization within MGE regions
Location: 878625..939819
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZG34_RS05130 (BZG34_05095) | purM | 880206..881240 (-) | 1035 | WP_003691398.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| BZG34_RS05135 (BZG34_05100) | - | 881481..881669 (+) | 189 | WP_003689039.1 | hypothetical protein | - |
| BZG34_RS05140 (BZG34_05105) | - | 881929..882918 (+) | 990 | WP_003689040.1 | site-specific integrase | - |
| BZG34_RS05150 (BZG34_05115) | - | 883260..883739 (+) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| BZG34_RS05155 (BZG34_05120) | - | 883799..886843 (-) | 3045 | WP_050155384.1 | tape measure protein | - |
| BZG34_RS05160 (BZG34_05125) | - | 886873..887022 (-) | 150 | WP_003691402.1 | hypothetical protein | - |
| BZG34_RS13420 | - | 887334..887507 (-) | 174 | WP_017146757.1 | hypothetical protein | - |
| BZG34_RS05165 (BZG34_05130) | - | 887491..887832 (-) | 342 | WP_003700102.1 | hypothetical protein | - |
| BZG34_RS13425 (BZG34_05135) | - | 887816..887974 (-) | 159 | WP_003691816.1 | hypothetical protein | - |
| BZG34_RS05170 (BZG34_05140) | - | 887974..888513 (-) | 540 | WP_050153719.1 | TIGR02594 family protein | - |
| BZG34_RS14525 | - | 888555..888680 (-) | 126 | WP_255294325.1 | hypothetical protein | - |
| BZG34_RS05180 (BZG34_05150) | - | 888720..888956 (+) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| BZG34_RS05185 (BZG34_05155) | - | 888956..889303 (+) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| BZG34_RS05190 (BZG34_05160) | - | 889669..890001 (-) | 333 | WP_003691408.1 | hypothetical protein | - |
| BZG34_RS05195 (BZG34_05165) | - | 890002..890472 (-) | 471 | WP_003689057.1 | hypothetical protein | - |
| BZG34_RS05200 (BZG34_05170) | - | 890543..890848 (-) | 306 | WP_003689058.1 | hypothetical protein | - |
| BZG34_RS05205 (BZG34_05175) | - | 890960..895105 (-) | 4146 | WP_050155385.1 | phage tail protein | - |
| BZG34_RS05210 (BZG34_05180) | - | 895345..895623 (+) | 279 | WP_003689062.1 | XRE family transcriptional regulator | - |
| BZG34_RS05215 (BZG34_05185) | - | 895651..896082 (-) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| BZG34_RS05220 (BZG34_05190) | - | 896084..896938 (-) | 855 | WP_003698614.1 | DUF2163 domain-containing protein | - |
| BZG34_RS05225 (BZG34_05195) | - | 896935..897534 (-) | 600 | WP_003692874.1 | DUF2460 domain-containing protein | - |
| BZG34_RS05230 (BZG34_05200) | - | 897534..897800 (-) | 267 | WP_003689070.1 | hypothetical protein | - |
| BZG34_RS05235 (BZG34_05205) | - | 897812..898141 (-) | 330 | WP_003692871.1 | hypothetical protein | - |
| BZG34_RS05240 (BZG34_05210) | - | 898202..898975 (-) | 774 | WP_003691416.1 | hypothetical protein | - |
| BZG34_RS05245 (BZG34_05215) | - | 899001..899429 (-) | 429 | WP_003689076.1 | hypothetical protein | - |
| BZG34_RS05250 (BZG34_05220) | - | 899426..899908 (-) | 483 | WP_044271038.1 | HK97 gp10 family phage protein | - |
| BZG34_RS05255 (BZG34_05225) | - | 899908..900438 (-) | 531 | WP_003689080.1 | head-tail connector protein | - |
| BZG34_RS13760 (BZG34_05230) | - | 900441..900803 (-) | 363 | WP_003689082.1 | hypothetical protein | - |
| BZG34_RS05265 (BZG34_05235) | - | 900810..902309 (-) | 1500 | WP_047925362.1 | hypothetical protein | - |
| BZG34_RS05270 (BZG34_05240) | - | 902350..903507 (-) | 1158 | WP_003691421.1 | HK97 family phage prohead protease | - |
| BZG34_RS05275 (BZG34_05245) | - | 903575..905722 (-) | 2148 | WP_003691423.1 | phage portal protein | - |
| BZG34_RS05280 (BZG34_05250) | terL | 905719..907140 (-) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| BZG34_RS05285 (BZG34_05255) | - | 907202..907651 (-) | 450 | WP_003689093.1 | hypothetical protein | - |
| BZG34_RS05290 (BZG34_05260) | - | 907944..908813 (-) | 870 | WP_047921543.1 | BRO family protein | - |
| BZG34_RS05295 (BZG34_05265) | - | 909094..909513 (-) | 420 | WP_229690312.1 | type I restriction endonuclease | - |
| BZG34_RS05300 (BZG34_05270) | - | 909604..910011 (-) | 408 | WP_003691430.1 | hypothetical protein | - |
| BZG34_RS14530 | - | 910133..910261 (+) | 129 | WP_012503747.1 | hypothetical protein | - |
| BZG34_RS05310 (BZG34_05280) | - | 910278..910658 (-) | 381 | WP_017147222.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BZG34_RS14310 | - | 910649..910930 (-) | 282 | WP_003689109.1 | hypothetical protein | - |
| BZG34_RS05315 (BZG34_05285) | - | 910959..911108 (-) | 150 | WP_003689110.1 | hypothetical protein | - |
| BZG34_RS05320 (BZG34_05290) | - | 911285..911779 (-) | 495 | WP_041421248.1 | DUF3310 domain-containing protein | - |
| BZG34_RS05325 (BZG34_05295) | - | 911818..912081 (-) | 264 | WP_154235845.1 | hypothetical protein | - |
| BZG34_RS05330 (BZG34_05300) | - | 912118..913479 (-) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| BZG34_RS05335 (BZG34_05305) | - | 913476..914540 (-) | 1065 | WP_050154181.1 | hypothetical protein | - |
| BZG34_RS05340 (BZG34_05310) | - | 914658..914885 (-) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| BZG34_RS05350 (BZG34_05320) | - | 915266..915982 (+) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| BZG34_RS05355 (BZG34_05325) | - | 916142..916681 (+) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| BZG34_RS05360 (BZG34_05330) | - | 916682..917041 (+) | 360 | WP_003691733.1 | hypothetical protein | - |
| BZG34_RS05365 (BZG34_05335) | - | 917058..917276 (-) | 219 | WP_003691731.1 | hypothetical protein | - |
| BZG34_RS05370 (BZG34_05340) | - | 917760..917960 (+) | 201 | WP_047920246.1 | hypothetical protein | - |
| BZG34_RS05375 (BZG34_05345) | - | 917993..918469 (+) | 477 | WP_002255718.1 | hypothetical protein | - |
| BZG34_RS05380 (BZG34_05350) | - | 918466..918759 (+) | 294 | WP_119160497.1 | hypothetical protein | - |
| BZG34_RS05385 (BZG34_05355) | - | 918901..919233 (+) | 333 | WP_050155386.1 | hypothetical protein | - |
| BZG34_RS05390 (BZG34_05360) | - | 919386..919661 (+) | 276 | WP_050155387.1 | NGO1622 family putative holin | - |
| BZG34_RS05395 (BZG34_05365) | - | 919658..919819 (+) | 162 | WP_003693867.1 | hypothetical protein | - |
| BZG34_RS05400 (BZG34_05370) | - | 919888..920574 (+) | 687 | WP_042758540.1 | phage replication initiation protein, NGO0469 family | - |
| BZG34_RS05405 (BZG34_05375) | - | 920714..920896 (+) | 183 | WP_003691535.1 | hypothetical protein | - |
| BZG34_RS05410 (BZG34_05380) | - | 920893..921384 (+) | 492 | WP_047916888.1 | siphovirus Gp157 family protein | - |
| BZG34_RS05415 (BZG34_05385) | - | 921436..921651 (+) | 216 | WP_003691538.1 | hypothetical protein | - |
| BZG34_RS14675 | - | 921762..921995 (+) | 234 | Protein_946 | hypothetical protein | - |
| BZG34_RS05425 (BZG34_05395) | - | 922309..922992 (+) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| BZG34_RS05430 (BZG34_05400) | - | 923187..923456 (+) | 270 | WP_003687928.1 | hypothetical protein | - |
| BZG34_RS05445 (BZG34_05410) | - | 923812..925012 (-) | 1201 | Protein_949 | tyrosine-type recombinase/integrase | - |
| BZG34_RS05460 (BZG34_05425) | yaaA | 925542..926321 (-) | 780 | WP_003687925.1 | peroxide stress protein YaaA | - |
| BZG34_RS05465 (BZG34_05430) | dapC | 926477..927664 (-) | 1188 | WP_003701073.1 | succinyldiaminopimelate transaminase | - |
| BZG34_RS05470 (BZG34_05435) | dut | 927736..928188 (-) | 453 | WP_003701071.1 | dUTP diphosphatase | - |
| BZG34_RS05475 (BZG34_05440) | - | 928354..929065 (+) | 712 | Protein_953 | AzlC family ABC transporter permease | - |
| BZG34_RS05480 (BZG34_05445) | - | 929062..929370 (+) | 309 | WP_003706588.1 | AzlD family protein | - |
| BZG34_RS05485 (BZG34_05450) | pilL | 929440..929913 (-) | 474 | WP_012503482.1 | PilX family type IV pilin | Machinery gene |
| BZG34_RS05490 (BZG34_05455) | pilK | 929915..930523 (-) | 609 | WP_047921847.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| BZG34_RS05495 (BZG34_05460) | pilJ | 930502..931464 (-) | 963 | WP_047921846.1 | PilW family protein | Machinery gene |
| BZG34_RS05500 (BZG34_05465) | pilI | 931461..932075 (-) | 615 | WP_012503479.1 | type IV pilus modification protein PilV | Machinery gene |
| BZG34_RS05505 (BZG34_05470) | pilH | 932107..932769 (-) | 663 | WP_047916986.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| BZG34_RS05510 (BZG34_05475) | dnaB | 933026..934429 (-) | 1404 | WP_012503477.1 | replicative DNA helicase | - |
| BZG34_RS05520 (BZG34_05485) | - | 934593..935174 (+) | 582 | WP_003690895.1 | superoxide dismutase | - |
| BZG34_RS05530 (BZG34_05495) | - | 935406..935915 (-) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| BZG34_RS05535 (BZG34_05500) | - | 936245..936577 (-) | 333 | WP_003687908.1 | hypothetical protein | - |
| BZG34_RS05540 (BZG34_05505) | cysT | 936763..937592 (+) | 830 | Protein_964 | sulfate ABC transporter permease subunit CysT | - |
| BZG34_RS05545 (BZG34_05510) | cysW | 937781..938602 (+) | 822 | WP_012503473.1 | sulfate ABC transporter permease subunit CysW | - |
| BZG34_RS13765 | - | 938598..938705 (+) | 108 | Protein_966 | IS5/IS1182 family transposase | - |
| BZG34_RS05550 (BZG34_05520) | - | 938743..939819 (+) | 1077 | WP_003687905.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 35251.96 Da Isoelectric Point: 8.4268
>NTDB_id=216011 BZG34_RS05495 WP_047921846.1 930502..931464(-) (pilJ) [Neisseria gonorrhoeae strain RIVM0640]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDANASAETTV
VSSCGAISKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKV
KRMDVRYIYVSDCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDANASAETTV
VSSCGAISKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKV
KRMDVRYIYVSDCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 963 bp
>NTDB_id=216011 BZG34_RS05495 WP_047921846.1 930502..931464(-) (pilJ) [Neisseria gonorrhoeae strain RIVM0640]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTC
GTCAGCAGCTGTGGCGCAATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCA
GGATTCTGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATAATGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTT
AAACGTATGGATGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATA
TACGGGTAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTT
TGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTC
GTCAGCAGCTGTGGCGCAATATCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCA
GGATTCTGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATAATGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTT
AAACGTATGGATGTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATA
TACGGGTAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTT
TGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
87.5 |
100 |
0.875 |