Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CVO91_RS05535 Genome accession   NZ_CP024974
Coordinates   1084798..1085478 (+) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain CZ130302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079798..1090478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS05525 (CVO91_05525) - 1080624..1082309 (+) 1686 WP_002940747.1 glucosyltransferase domain-containing protein -
  CVO91_RS05530 (CVO91_05530) - 1082329..1083792 (+) 1464 WP_002940746.1 glucosyltransferase domain-containing protein -
  CVO91_RS05535 (CVO91_05535) radC 1084798..1085478 (+) 681 WP_002935253.1 DNA repair protein RadC Machinery gene
  CVO91_RS05540 (CVO91_05540) - 1085475..1086167 (-) 693 WP_002940744.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CVO91_RS05545 (CVO91_05545) - 1086171..1086809 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  CVO91_RS05550 (CVO91_05550) - 1086944..1087147 (-) 204 WP_002940737.1 DUF4649 family protein -
  CVO91_RS05555 (CVO91_05555) - 1087149..1087493 (-) 345 WP_002940732.1 DUF1831 domain-containing protein -
  CVO91_RS05560 (CVO91_05560) - 1087495..1088610 (-) 1116 WP_002940730.1 cysteine desulfurase family protein -
  CVO91_RS05565 (CVO91_05565) - 1088621..1089598 (-) 978 WP_002940729.1 ribose-phosphate diphosphokinase -
  CVO91_RS05570 (CVO91_05570) - 1089743..1090309 (-) 567 WP_002940728.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=215817 CVO91_RS05535 WP_002935253.1 1084798..1085478(+) (radC) [Streptococcus suis strain CZ130302]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=215817 CVO91_RS05535 WP_002935253.1 1084798..1085478(+) (radC) [Streptococcus suis strain CZ130302]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACCGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGCATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCACCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAACA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482