Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   CVO91_RS02890 Genome accession   NZ_CP024974
Coordinates   530159..530824 (+) Length   221 a.a.
NCBI ID   WP_002941737.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525159..535824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS02850 (CVO91_02850) - 525288..525713 (+) 426 WP_004195047.1 DUF1366 domain-containing protein -
  CVO91_RS02855 (CVO91_02855) - 525717..525929 (+) 213 WP_004195045.1 hypothetical protein -
  CVO91_RS02860 (CVO91_02860) - 525933..526358 (+) 426 WP_004195044.1 hypothetical protein -
  CVO91_RS02865 (CVO91_02865) - 526362..526616 (+) 255 WP_004195043.1 phage holin -
  CVO91_RS02870 (CVO91_02870) - 526703..527389 (+) 687 WP_004195041.1 CHAP domain-containing protein -
  CVO91_RS02875 (CVO91_02875) - 527450..527827 (+) 378 WP_004195039.1 PBECR2 nuclease fold domain-containing protein -
  CVO91_RS02880 (CVO91_02880) - 528185..528817 (-) 633 WP_004195179.1 YigZ family protein -
  CVO91_RS02885 (CVO91_02885) comFA/cflA 528874..530166 (+) 1293 WP_004195177.1 DEAD/DEAH box helicase Machinery gene
  CVO91_RS02890 (CVO91_02890) comFC/cflB 530159..530824 (+) 666 WP_002941737.1 ComF family protein Machinery gene
  CVO91_RS02895 (CVO91_02895) raiA 530902..531444 (+) 543 WP_002941735.1 ribosome-associated translation inhibitor RaiA -
  CVO91_RS02900 (CVO91_02900) tnpA 531605..532111 (+) 507 Protein_527 IS200/IS605 family transposase -
  CVO91_RS02905 (CVO91_02905) - 532353..533483 (+) 1131 WP_100664749.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25788.71 Da        Isoelectric Point: 8.6258

>NTDB_id=215800 CVO91_RS02890 WP_002941737.1 530159..530824(+) (comFC/cflB) [Streptococcus suis strain CZ130302]
MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLLERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=215800 CVO91_RS02890 WP_002941737.1 530159..530824(+) (comFC/cflB) [Streptococcus suis strain CZ130302]
ATGTCTAATTGTCTATTGTGCGCCCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGTATATGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTTCATACAGCTTTGTACCGATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATTAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48