Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PspS49_RS26350 Genome accession   NZ_CP019432
Coordinates   5956277..5956804 (-) Length   175 a.a.
NCBI ID   WP_127929967.1    Uniprot ID   A0A7Z2KY26
Organism   Pseudomonas sp. S49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5936368..5956071 5956277..5956804 flank 206


Gene organization within MGE regions


Location: 5936368..5956804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS49_RS26250 (PspS49_26575) - 5936368..5937117 (-) 750 WP_160042014.1 restriction endonuclease -
  PspS49_RS26255 (PspS49_26580) - 5937117..5937923 (-) 807 WP_160042016.1 hypothetical protein -
  PspS49_RS26260 (PspS49_26585) - 5938366..5939010 (+) 645 WP_160042018.1 hypothetical protein -
  PspS49_RS26265 (PspS49_26590) - 5939003..5939869 (+) 867 WP_160042020.1 ImmA/IrrE family metallo-endopeptidase -
  PspS49_RS26270 (PspS49_26595) - 5939862..5940932 (+) 1071 WP_160042022.1 hypothetical protein -
  PspS49_RS26275 (PspS49_26600) - 5940891..5941478 (-) 588 WP_160042024.1 sce7726 family protein -
  PspS49_RS26280 (PspS49_26605) - 5941904..5942803 (-) 900 WP_160042026.1 hypothetical protein -
  PspS49_RS26285 (PspS49_26610) - 5943148..5944431 (+) 1284 WP_202982096.1 hypothetical protein -
  PspS49_RS29945 (PspS49_26615) - 5944727..5945062 (-) 336 WP_238786306.1 DUF6527 family protein -
  PspS49_RS26290 (PspS49_26620) - 5945062..5946432 (-) 1371 WP_238786307.1 ThiF family adenylyltransferase -
  PspS49_RS26295 (PspS49_26625) - 5946453..5947538 (-) 1086 WP_160042030.1 multiubiquitin domain-containing protein -
  PspS49_RS26300 (PspS49_26630) - 5948044..5948364 (+) 321 WP_160042032.1 helix-turn-helix transcriptional regulator -
  PspS49_RS26305 (PspS49_26635) - 5948367..5949251 (+) 885 WP_160042034.1 ImmA/IrrE family metallo-endopeptidase -
  PspS49_RS26310 - 5949428..5949988 (+) 561 WP_160042036.1 hypothetical protein -
  PspS49_RS30020 - 5950470..5950604 (-) 135 WP_275113736.1 hypothetical protein -
  PspS49_RS26320 (PspS49_26650) - 5950835..5951722 (+) 888 WP_160042038.1 LysR family transcriptional regulator -
  PspS49_RS26325 (PspS49_26655) - 5951899..5953437 (+) 1539 WP_160042040.1 AAA family ATPase -
  PspS49_RS26330 (PspS49_26660) - 5953434..5954327 (+) 894 WP_160042042.1 hypothetical protein -
  PspS49_RS26335 (PspS49_26665) - 5954654..5954992 (-) 339 Protein_5206 S24 family peptidase -
  PspS49_RS26340 (PspS49_26670) - 5955003..5955725 (-) 723 WP_160042046.1 site-specific integrase -
  PspS49_RS26350 (PspS49_26680) ssb 5956277..5956804 (-) 528 WP_127929967.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19329.47 Da        Isoelectric Point: 5.9314

>NTDB_id=215765 PspS49_RS26350 WP_127929967.1 5956277..5956804(-) (ssb) [Pseudomonas sp. S49]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPSAPRQQAPRPQQSAPQQRSAPAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=215765 PspS49_RS26350 WP_127929967.1 5956277..5956804(-) (ssb) [Pseudomonas sp. S49]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAGGGCGGTGGCAACAACTACCAGCAGTCGGCGCCATCTG
CTCCACGTCAGCAGGCTCCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGGCTCCACAGCAGGCCGCACCG
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2KY26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.606
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.531
  ssb Neisseria meningitidis MC58

47.778

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491

Multiple sequence alignment