Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PspS35_RS26620 Genome accession   NZ_CP019431
Coordinates   5899375..5899890 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. S35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5877444..5899065 5899375..5899890 flank 310


Gene organization within MGE regions


Location: 5877444..5899890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS35_RS26535 (PspS35_26705) - 5877444..5878562 (+) 1119 WP_159937446.1 hypothetical protein -
  PspS35_RS26540 (PspS35_26710) - 5878555..5879109 (+) 555 WP_159937447.1 hypothetical protein -
  PspS35_RS26545 - 5879731..5880459 (-) 729 WP_159937448.1 hypothetical protein -
  PspS35_RS26550 (PspS35_26715) - 5880463..5881686 (-) 1224 WP_159937449.1 ATP-binding protein -
  PspS35_RS26555 (PspS35_26720) - 5882126..5882398 (+) 273 Protein_5254 DDE-type integrase/transposase/recombinase -
  PspS35_RS26560 (PspS35_26725) - 5882420..5884294 (-) 1875 WP_159937450.1 UvrD-helicase domain-containing protein -
  PspS35_RS26565 (PspS35_26730) - 5884291..5886600 (-) 2310 WP_159937451.1 AAA family ATPase -
  PspS35_RS26570 (PspS35_26735) - 5886827..5889253 (-) 2427 WP_159937452.1 DEAD/DEAH box helicase -
  PspS35_RS26575 (PspS35_26740) - 5889456..5890367 (-) 912 WP_159937453.1 hypothetical protein -
  PspS35_RS26580 (PspS35_26745) - 5890687..5892072 (+) 1386 WP_159937454.1 ATP-binding protein -
  PspS35_RS26585 (PspS35_26750) - 5892357..5892761 (+) 405 WP_159937455.1 hypothetical protein -
  PspS35_RS26590 (PspS35_26755) - 5892800..5893081 (-) 282 WP_159937456.1 hypothetical protein -
  PspS35_RS26595 (PspS35_26760) - 5893262..5893873 (-) 612 WP_159937457.1 GNAT family N-acetyltransferase -
  PspS35_RS26600 (PspS35_26765) - 5893909..5894349 (-) 441 WP_159937458.1 hypothetical protein -
  PspS35_RS26605 (PspS35_26770) - 5894342..5896408 (-) 2067 WP_159937459.1 integrase -
  PspS35_RS26610 (PspS35_26775) - 5896398..5897963 (-) 1566 WP_159937460.1 site-specific integrase -
  PspS35_RS26615 (PspS35_26780) - 5897956..5899242 (-) 1287 WP_159937461.1 site-specific integrase -
  PspS35_RS26620 (PspS35_26785) ssb 5899375..5899890 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=215736 PspS35_RS26620 WP_003232445.1 5899375..5899890(-) (ssb) [Pseudomonas sp. S35]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=215736 PspS35_RS26620 WP_003232445.1 5899375..5899890(-) (ssb) [Pseudomonas sp. S35]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTCGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAAGGCGGCATGTCCAACTCGGCGCCACGTCCACAGC
AGTCGCGTCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCCCAGCAGGCCGCTCCGCAGCCGGCTCCG
GACTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment