Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PspS35_RS17350 Genome accession   NZ_CP019431
Coordinates   3913399..3915624 (-) Length   741 a.a.
NCBI ID   WP_238785881.1    Uniprot ID   -
Organism   Pseudomonas sp. S35     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3908399..3920624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS35_RS17315 (PspS35_17485) murB 3908768..3909787 (-) 1020 WP_159936007.1 UDP-N-acetylmuramate dehydrogenase -
  PspS35_RS17320 (PspS35_17490) - 3909784..3910248 (-) 465 WP_159936008.1 low molecular weight protein-tyrosine-phosphatase -
  PspS35_RS17325 (PspS35_17495) kdsB 3910248..3911012 (-) 765 WP_159936010.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspS35_RS17330 (PspS35_17500) - 3911009..3911194 (-) 186 WP_003174668.1 Trm112 family protein -
  PspS35_RS17335 (PspS35_17505) lpxK 3911219..3912229 (-) 1011 WP_159936012.1 tetraacyldisaccharide 4'-kinase -
  PspS35_RS17340 (PspS35_17510) - 3912229..3912657 (-) 429 WP_159936013.1 biopolymer transporter ExbD -
  PspS35_RS17345 (PspS35_17515) exbB 3912654..3913289 (-) 636 WP_159936015.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspS35_RS17350 (PspS35_17520) comA 3913399..3915624 (-) 2226 WP_238785881.1 ComEC/Rec2 family competence protein Machinery gene
  PspS35_RS17355 (PspS35_17525) - 3915760..3916275 (+) 516 WP_159936017.1 DUF2062 domain-containing protein -
  PspS35_RS17360 (PspS35_17530) - 3916279..3917646 (-) 1368 WP_159936019.1 sensor histidine kinase -
  PspS35_RS17365 (PspS35_17535) - 3917636..3918364 (-) 729 WP_159936021.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80056.84 Da        Isoelectric Point: 10.2667

>NTDB_id=215729 PspS35_RS17350 WP_238785881.1 3913399..3915624(-) (comA) [Pseudomonas sp. S35]
MKTGMFALALGLLALRFLPALPATGWLIATLVLALMLLPFRTYPLAFFLLGLGWACISAQWALNDRLSPKLDGQTRWLEG
RVVGLPQQTATGVRFELADSRARNGQLPKRIRVSWHGGPAVRSGEYWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGATG
SVKDGERLAPARHAWRDAVRQRLMAVDANGREAGLAALVLGDGSGLAADDWQVLQDTGTVHLMVISGQHIGLLAGLIYGL
VALLARYGYWPSIWPWLPCACGLAFAAALGYGLLAGFGVPVQRACIMVGLVLLWRLRFRHLGFWWPLLLALNGVLILDPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSTWQVWTRPQWVIAIGLFPLLLMLGLPISITAPLANLIAVPWISLVVLPLAL
LGTALLAVPLLGEGVLWLAGGALDGLFRGLAWLAGQVPAWTPTEVPLGYWLGSLLGAGLLLLPKGVPFRPLGWPLLLLAV
FPAQEPVPHGQAQVVQLDVGQGQALILRTRHHTLLYDAGLRSGAVDLGERVVLPALKKLGVRGLDIMLLSHADADHAGGA
TAVARGLPVKRVVGGETEGLPALLGTQPCTSGERWVWDGVSFELWQWADAIDGNPKSCVLQVQANGERLLLTADIDRAAE
RAFLDSSLAVRTDWLQAPHHGSRSSSSWPFLQRLAPTSVLISRGRGNAFGHPHPQVMGRYQALGSQIYDSAEQGAVRVQL
GAFLPPTVARGQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=215729 PspS35_RS17350 WP_238785881.1 3913399..3915624(-) (comA) [Pseudomonas sp. S35]
ATGAAGACAGGGATGTTTGCGCTTGCGCTGGGGTTGCTTGCCCTGCGTTTTCTACCGGCGTTGCCTGCGACTGGGTGGCT
GATAGCCACCCTGGTGCTGGCATTGATGCTATTACCTTTTCGTACGTATCCATTGGCATTTTTCCTATTGGGCTTGGGCT
GGGCCTGCATCAGTGCCCAATGGGCGCTCAATGACCGGCTGTCACCCAAGCTCGATGGCCAGACACGTTGGCTGGAGGGT
CGGGTGGTCGGGCTACCGCAGCAGACCGCCACGGGCGTGCGTTTTGAGCTGGCGGACAGCCGGGCACGCAACGGCCAGTT
GCCCAAACGCATCCGAGTGTCCTGGCATGGCGGACCAGCGGTACGCAGTGGGGAGTACTGGCGCTTGGCCGTTACGTTGA
AGCGGCCTTCCGGGTTGCTCAACTTTCACGGCTTTGACTATGAAGCCTGGCTGCTGGCCCAGCGTATCGGCGCGACCGGC
TCGGTGAAGGACGGAGAGCGGCTGGCGCCGGCTCGCCATGCCTGGCGTGATGCTGTGCGCCAACGGCTCATGGCGGTCGA
TGCGAATGGCCGCGAGGCGGGCCTTGCCGCATTGGTGCTGGGCGACGGTTCCGGGCTGGCGGCCGATGATTGGCAGGTGC
TGCAGGATACCGGCACGGTACATCTAATGGTGATTTCCGGCCAACACATCGGCTTGCTCGCAGGGCTGATTTACGGGCTG
GTAGCTCTATTGGCGCGTTACGGCTACTGGCCCAGCATCTGGCCGTGGTTACCTTGCGCATGCGGCCTGGCGTTCGCTGC
GGCACTGGGTTATGGCCTGCTTGCTGGGTTCGGCGTGCCCGTGCAGCGGGCCTGCATCATGGTGGGGTTGGTACTGTTGT
GGCGGTTACGCTTTCGCCATTTGGGATTCTGGTGGCCGTTGCTGCTGGCGCTTAACGGGGTGCTGATCCTTGATCCATTG
GCCAGCCTGCAGCCGGGGTTTTGGTTGTCTTTTGCGGCAGTCGCCGTGCTGGTCCTGGCTTTCGGTGGGCGTTTGGGCCC
CTGGAGTACCTGGCAGGTCTGGACTCGCCCTCAGTGGGTGATTGCCATTGGTCTGTTCCCGCTGTTGCTGATGCTTGGCT
TACCGATCAGCATCACCGCTCCATTGGCCAATCTGATTGCTGTGCCATGGATCAGCCTGGTGGTACTGCCATTGGCGTTG
TTGGGCACCGCGTTATTGGCGGTGCCATTGCTGGGAGAAGGCGTGTTGTGGCTGGCCGGCGGGGCATTGGATGGGTTGTT
CCGGGGCTTGGCATGGCTTGCTGGGCAAGTGCCCGCCTGGACACCGACCGAGGTGCCATTGGGTTACTGGTTGGGCAGCC
TCCTGGGCGCCGGGCTGTTATTGCTGCCCAAAGGTGTGCCGTTCAGGCCGCTGGGTTGGCCGTTGTTGCTGTTGGCGGTG
TTCCCTGCGCAGGAACCGGTGCCCCATGGGCAGGCGCAGGTGGTGCAGTTGGATGTAGGGCAGGGGCAGGCGTTGATCCT
GCGCACACGCCATCACACCCTGCTCTACGATGCAGGCCTGCGCTCGGGCGCGGTTGATCTGGGCGAGCGCGTGGTACTGC
CGGCGCTGAAGAAGCTCGGCGTCAGGGGGCTGGACATTATGTTGCTCAGCCATGCTGACGCGGATCATGCCGGCGGCGCG
ACGGCTGTTGCTCGCGGGCTGCCGGTGAAACGGGTCGTTGGAGGTGAGACCGAGGGGTTGCCTGCGCTTCTTGGCACTCA
ACCTTGTACCAGCGGTGAGCGGTGGGTGTGGGATGGCGTGTCATTCGAGTTGTGGCAGTGGGCCGATGCGATTGATGGCA
ACCCTAAATCCTGCGTGCTGCAGGTCCAGGCCAACGGCGAACGCCTGCTACTCACCGCAGATATCGATCGCGCCGCTGAG
CGGGCATTTCTCGATTCATCATTAGCGGTGCGTACCGACTGGCTGCAGGCCCCACATCATGGCAGTCGCAGTTCGTCGTC
GTGGCCGTTTCTCCAGCGCCTGGCGCCCACTTCGGTGCTGATTTCCCGAGGGCGTGGCAATGCGTTTGGCCATCCTCATC
CCCAGGTGATGGGCCGCTACCAGGCACTGGGCAGCCAAATATATGACAGTGCTGAGCAGGGAGCGGTGCGCGTGCAATTA
GGCGCTTTCCTGCCACCGACTGTTGCGCGTGGTCAACGCCGTTTTTGGCGCGAGGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-662)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.944

97.031

0.582
  comA Ralstonia pseudosolanacearum GMI1000

34.005

100

0.364

Multiple sequence alignment