Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PspS35_RS17345 Genome accession   NZ_CP019431
Coordinates   3912654..3913289 (-) Length   211 a.a.
NCBI ID   WP_159936015.1    Uniprot ID   -
Organism   Pseudomonas sp. S35     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3907654..3918289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS35_RS17310 (PspS35_17480) - 3908034..3908705 (+) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -
  PspS35_RS17315 (PspS35_17485) murB 3908768..3909787 (-) 1020 WP_159936007.1 UDP-N-acetylmuramate dehydrogenase -
  PspS35_RS17320 (PspS35_17490) - 3909784..3910248 (-) 465 WP_159936008.1 low molecular weight protein-tyrosine-phosphatase -
  PspS35_RS17325 (PspS35_17495) kdsB 3910248..3911012 (-) 765 WP_159936010.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspS35_RS17330 (PspS35_17500) - 3911009..3911194 (-) 186 WP_003174668.1 Trm112 family protein -
  PspS35_RS17335 (PspS35_17505) lpxK 3911219..3912229 (-) 1011 WP_159936012.1 tetraacyldisaccharide 4'-kinase -
  PspS35_RS17340 (PspS35_17510) - 3912229..3912657 (-) 429 WP_159936013.1 biopolymer transporter ExbD -
  PspS35_RS17345 (PspS35_17515) exbB 3912654..3913289 (-) 636 WP_159936015.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspS35_RS17350 (PspS35_17520) comA 3913399..3915624 (-) 2226 WP_238785881.1 ComEC/Rec2 family competence protein Machinery gene
  PspS35_RS17355 (PspS35_17525) - 3915760..3916275 (+) 516 WP_159936017.1 DUF2062 domain-containing protein -
  PspS35_RS17360 (PspS35_17530) - 3916279..3917646 (-) 1368 WP_159936019.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22767.94 Da        Isoelectric Point: 7.3613

>NTDB_id=215728 PspS35_RS17345 WP_159936015.1 3912654..3913289(-) (exbB) [Pseudomonas sp. S35]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=215728 PspS35_RS17345 WP_159936015.1 3912654..3913289(-) (exbB) [Pseudomonas sp. S35]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCTGAGCATTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGTTGGACAAGGAAAAACTCAAGGCATTGCGGGCCGACTCACCGCTGGGTGAAATCCTCGCCGCGGGGCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTGCCCGCGTCATTCACGAATTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGGCGGGCATGACCACTAATGCTGCTGTGCTGGCCGGGGGTATCTCCAAGGCATTGATCACCACGGCG
GCAGGCCTGATGGTCGGCATCCCTTCGGTGTTTTTCCACCGATTCCTGCAGCGGCGCATCGATGAACTGGTGGTGGGTAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment