Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PspR76_RS27395 Genome accession   NZ_CP019428
Coordinates   6055671..6056198 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. R76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6050671..6061198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR76_RS27370 (PspR76_27865) - 6051142..6051897 (-) 756 WP_159960280.1 alpha/beta fold hydrolase -
  PspR76_RS27375 (PspR76_27870) - 6051887..6052996 (-) 1110 WP_159960282.1 DUF3182 family protein -
  PspR76_RS27380 (PspR76_27875) - 6053236..6053796 (+) 561 WP_159960284.1 cysteine hydrolase family protein -
  PspR76_RS27385 (PspR76_27880) tam 6053818..6054579 (-) 762 WP_159960286.1 trans-aconitate 2-methyltransferase -
  PspR76_RS27390 (PspR76_27885) - 6054695..6055603 (+) 909 WP_159960288.1 LysR family transcriptional regulator -
  PspR76_RS27395 (PspR76_27890) ssb 6055671..6056198 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  PspR76_RS27400 (PspR76_27895) - 6056208..6057602 (-) 1395 WP_159960290.1 MFS transporter -
  PspR76_RS27405 (PspR76_27900) uvrA 6057781..6060615 (+) 2835 WP_159960292.1 excinuclease ABC subunit UvrA -
  PspR76_RS27410 (PspR76_27905) bfr 6060681..6061145 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=215698 PspR76_RS27395 WP_010467282.1 6055671..6056198(-) (ssb) [Pseudomonas sp. R76]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=215698 PspR76_RS27395 WP_010467282.1 6055671..6056198(-) (ssb) [Pseudomonas sp. R76]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTTTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGCGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAGTCGCGCCAGGCGCCGCCTCCACAACAGGCCGCACCA
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491

Multiple sequence alignment