Detailed information NTG0215643

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PspR84_RS21225
• Genome accession: NZ_CP019426
• Coordinates: 4806674..4808908 (-)
• Length: 744 a.a.
• NCBI ID: WP_160059024.1
• Uniprot ID: A0A7Z2QQF3
• Organism: Pseudomonas sp. R84
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4801674..4813908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspR84_RS21190 (PspR84_21420)	murB	4802054..4803073 (-)	1020	WP_160059020.1	UDP-N-acetylmuramate dehydrogenase	-
PspR84_RS21195 (PspR84_21425)	-	4803070..4803534 (-)	465	WP_160059021.1	low molecular weight protein-tyrosine-phosphatase	-
PspR84_RS21200 (PspR84_21430)	kdsB	4803534..4804298 (-)	765	WP_160059022.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PspR84_RS21205 (PspR84_21435)	-	4804295..4804480 (-)	186	WP_003174668.1	Trm112 family protein	-
PspR84_RS21210 (PspR84_21440)	lpxK	4804502..4805512 (-)	1011	WP_160059023.1	tetraacyldisaccharide 4'-kinase	-
PspR84_RS21215 (PspR84_21445)	-	4805512..4805940 (-)	429	WP_007908223.1	biopolymer transporter ExbD	-
PspR84_RS21220 (PspR84_21450)	exbB	4805937..4806572 (-)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PspR84_RS21225 (PspR84_21455)	comA	4806674..4808908 (-)	2235	WP_160059024.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PspR84_RS21230 (PspR84_21460)	-	4809045..4809563 (+)	519	WP_007908202.1	DUF2062 domain-containing protein	-
PspR84_RS21235 (PspR84_21465)	-	4809707..4810486 (-)	780	WP_008087860.1	ABC transporter permease	-
PspR84_RS21240 (PspR84_21470)	-	4810483..4811415 (-)	933	WP_160059025.1	ABC transporter ATP-binding protein	-
PspR84_RS21245 (PspR84_21475)	-	4811539..4812162 (-)	624	WP_160059026.1	glutathione S-transferase	-
PspR84_RS21250 (PspR84_21480)	-	4812206..4812865 (-)	660	WP_160059027.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82000.26 Da
• Isoelectric Point: 10.1108

>NTDB_id=215643 PspR84_RS21225 WP_160059024.1 4806674..4808908(-) (comA) [Pseudomonas sp. R84]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVAALMLLPFRSYPLAFLLLGFTWSCVSAQWALNDRLPTELDGETRWLEG
RVIGLPQSAEGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPAGLLNPDAFDYEAWLLAQRVGATG
TIKDGQRLSEARWAWRDSIRQRLLAVDAHGRTGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFAAAFGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLALNLPVSLSGPLANLLAVPWVSLVVLPPAL
LGTVLLPVPYVGAGLLWLAGGLIDVLFRALAMIAGHWPAWIAPSVPTWVWAIGGLGAVLLLLPRGVPMRALGWPLLLLLV
VPPRERLDEGLAEIWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALRKLSVRNLDLMLLSHADADHAGGA
LAITRGLTVDQVISGDPAGLPAQLSAEACESGRQWQWDGVRFQLWQWADAGDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKVLQPEAVLISRGQGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GRFKPPWTMRHQRRFWRDTPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=215643 PspR84_RS21225 WP_160059024.1 4806674..4808908(-) (comA) [Pseudomonas sp. R84]
ATGCGCACAGGGATGATGGCGCTGGCAGTTGGTCTGCTGGCCCCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGCTGCCGGTGGCTGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTTTGCTGTTGGGTTTTACGT
GGTCCTGTGTCAGCGCGCAGTGGGCGTTGAATGATCGTTTGCCGACTGAACTGGATGGCGAAACCCGCTGGCTCGAAGGA
CGGGTCATCGGCTTGCCGCAGAGCGCCGAGGGTGTGGTGCGTTTCGAGTTGGCGGATGCGCGCTCGCGTCATGAAAAGCT
GCCATCGCTGATGCGCCTCGCCTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGATTGGCAGTCAAACTCA
AGCGCCCCGCTGGTTTGCTCAATCCGGATGCGTTCGATTACGAGGCTTGGCTGCTGGCGCAACGCGTCGGTGCGACGGGC
ACGATCAAGGACGGTCAACGCCTGAGCGAAGCGCGTTGGGCCTGGCGCGACAGCATTCGTCAGCGCCTGCTTGCAGTGGA
TGCGCACGGTCGGACCGGTGCTCTGGCCGCGTTGGTGTTGGGCGATGGGTCCGGGCTCAGTCGTGAGGATTGGCAGATTT
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCGGCGGTGATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCATTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTCGCGGC
AGCGTTTGGTTATGGGCTGCTTGCCGGGTTCGATGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGCCATCTGGGGGCATGGTGGCCGTTGCTGCTGGCGTTCAATGGTGTGCTGTTGCTGGATCCGCTC
GCCAGTTTGCGTCCGGGTTTGTGGCTGTCGTTTGCGGCGGTGGCGGTGTTGATTTTCACCTTTGGCGGTCGTTTGGGTCC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAATGGTTGATTGCGATTGGTTTGTGCCCGGTTTTGCTGGCACTGAACC
TGCCGGTCAGTCTCAGCGGGCCGCTGGCCAATCTGCTCGCAGTGCCCTGGGTCAGTCTGGTGGTGTTACCGCCAGCGCTA
CTGGGGACGGTGTTGTTGCCTGTCCCTTATGTTGGCGCCGGCCTGCTGTGGCTGGCCGGCGGTTTGATCGACGTACTGTT
TCGCGCGCTGGCAATGATTGCCGGGCATTGGCCGGCGTGGATCGCACCCTCGGTACCCACTTGGGTCTGGGCCATTGGCG
GCCTCGGCGCCGTGTTGTTGCTGTTGCCGCGCGGCGTGCCGATGCGTGCACTGGGCTGGCCATTGCTATTGCTGCTGGTC
GTGCCACCCCGCGAGCGTCTGGATGAAGGGCTGGCCGAGATCTGGCAACTCGATGTCGGCCAAGGCCTGGCCATCCTGAT
CCGCACGCGTCATCACGCGCTGCTGTATGACGCGGGGCCACGCTTTGGCGATTTCGATCTCGGTGAGCGGGTGGTGCTGC
CTGCATTGCGCAAACTCAGCGTGAGAAACCTTGATCTGATGCTGCTTAGCCATGCGGACGCCGATCACGCTGGCGGTGCT
TTGGCGATCACTCGTGGTTTGACCGTCGATCAAGTGATCAGCGGCGACCCGGCGGGGCTGCCCGCGCAGTTGAGCGCCGA
GGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGACGCCGGCGACAGCA
ATCAGCGTTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGATATCGACACCCACGCCGAA
CGCGTATTACTCGACAGTCCACTGGCGGTCCCGACGCAATGGCTGCAATCGCCTCACCATGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAAGGTGCTGCAACCTGAAGCCGTGTTGATTTCTCGCGGACAGGGCAACTCTTTCGGCCATCCACATC
CGACCGTACTGGCGCGTTATCGCAAACAAGGCCTGCGCATTTACGACAGCGCCGAACAGGGCGCCATTCATCTGCAACTG
GGCCGCTTCAAACCGCCGTGGACGATGCGTCATCAGCGGCGTTTCTGGCGTGATACGCCTGCGCTCGCCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

3D structure

• AlphaFold DB: A0A7Z2QQF3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.204	96.371	0.599
comA	Ralstonia pseudosolanacearum GMI1000	33.135	100	0.375