Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PspR84_RS21220 Genome accession   NZ_CP019426
Coordinates   4805937..4806572 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. R84     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4800937..4811572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR84_RS21185 (PspR84_21415) - 4801271..4801741 (-) 471 WP_034155364.1 (2Fe-2S)-binding protein -
  PspR84_RS21190 (PspR84_21420) murB 4802054..4803073 (-) 1020 WP_160059020.1 UDP-N-acetylmuramate dehydrogenase -
  PspR84_RS21195 (PspR84_21425) - 4803070..4803534 (-) 465 WP_160059021.1 low molecular weight protein-tyrosine-phosphatase -
  PspR84_RS21200 (PspR84_21430) kdsB 4803534..4804298 (-) 765 WP_160059022.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspR84_RS21205 (PspR84_21435) - 4804295..4804480 (-) 186 WP_003174668.1 Trm112 family protein -
  PspR84_RS21210 (PspR84_21440) lpxK 4804502..4805512 (-) 1011 WP_160059023.1 tetraacyldisaccharide 4'-kinase -
  PspR84_RS21215 (PspR84_21445) - 4805512..4805940 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  PspR84_RS21220 (PspR84_21450) exbB 4805937..4806572 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspR84_RS21225 (PspR84_21455) comA 4806674..4808908 (-) 2235 WP_160059024.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PspR84_RS21230 (PspR84_21460) - 4809045..4809563 (+) 519 WP_007908202.1 DUF2062 domain-containing protein -
  PspR84_RS21235 (PspR84_21465) - 4809707..4810486 (-) 780 WP_008087860.1 ABC transporter permease -
  PspR84_RS21240 (PspR84_21470) - 4810483..4811415 (-) 933 WP_160059025.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=215642 PspR84_RS21220 WP_007908216.1 4805937..4806572(-) (exbB) [Pseudomonas sp. R84]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=215642 PspR84_RS21220 WP_007908216.1 4805937..4806572(-) (exbB) [Pseudomonas sp. R84]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCCCGGGTCATTCACGAACTCGAGCGCTACGT
TAATGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GTGCCTTCACTGGCTCAGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATTTCCAAAGCATTGATCACCACTGCG
GCAGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGGTTCCTGCAACGCCGTATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGATCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment