Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CV702_RS05115 Genome accession   NZ_CP024954
Coordinates   1055156..1055836 (+) Length   226 a.a.
NCBI ID   WP_017864419.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain F44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050156..1060836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV702_RS05095 (CV702_05100) - 1050520..1051035 (+) 516 WP_003131889.1 DUF2127 domain-containing protein -
  CV702_RS05100 (CV702_05105) - 1051039..1052364 (+) 1326 WP_003131891.1 sensor histidine kinase -
  CV702_RS05105 (CV702_05110) - 1052371..1053027 (+) 657 WP_017864418.1 phosphatase PAP2 family protein -
  CV702_RS05110 (CV702_05115) glmS 1053208..1055025 (+) 1818 WP_012897626.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  CV702_RS05115 (CV702_05120) radC 1055156..1055836 (+) 681 WP_017864419.1 RadC family protein Machinery gene
  CV702_RS05120 (CV702_05125) - 1055923..1056573 (-) 651 WP_017864420.1 redox-sensing transcriptional repressor Rex -
  CV702_RS05125 (CV702_05130) - 1056798..1057190 (+) 393 WP_012897687.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CV702_RS05130 (CV702_05135) - 1057368..1059275 (+) 1908 WP_003132741.1 ABC-F family ATP-binding cassette domain-containing protein -
  CV702_RS05135 (CV702_05140) - 1059448..1060305 (+) 858 WP_012897688.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25843.67 Da        Isoelectric Point: 7.4315

>NTDB_id=215615 CV702_RS05115 WP_017864419.1 1055156..1055836(+) (radC) [Lactococcus lactis subsp. lactis strain F44]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=215615 CV702_RS05115 WP_017864419.1 1055156..1055836(+) (radC) [Lactococcus lactis subsp. lactis strain F44]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGTTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.495

98.23

0.447
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.541

98.23

0.398

Multiple sequence alignment