Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PchlR47_RS28810 Genome accession   NZ_CP019399
Coordinates   6433568..6434080 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain R47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6428568..6439080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PchlR47_RS28785 (PchlR47_28950) - 6428661..6429656 (+) 996 WP_124302200.1 lysylphosphatidylglycerol synthase domain-containing protein -
  PchlR47_RS28790 (PchlR47_28955) - 6429729..6430484 (-) 756 WP_038575407.1 alpha/beta hydrolase family protein -
  PchlR47_RS28795 (PchlR47_28960) - 6430474..6431583 (-) 1110 WP_124345206.1 DUF3182 family protein -
  PchlR47_RS28800 (PchlR47_28965) - 6431765..6432772 (-) 1008 WP_016702648.1 GlxA family transcriptional regulator -
  PchlR47_RS28805 (PchlR47_28970) - 6432876..6433430 (+) 555 WP_101283715.1 cysteine hydrolase family protein -
  PchlR47_RS28810 (PchlR47_28975) ssb 6433568..6434080 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  PchlR47_RS28815 (PchlR47_28980) - 6434090..6435484 (-) 1395 WP_009051114.1 MFS transporter -
  PchlR47_RS28820 (PchlR47_28985) uvrA 6435665..6438499 (+) 2835 WP_016702646.1 excinuclease ABC subunit UvrA -
  PchlR47_RS28825 (PchlR47_28990) bfr 6438593..6439057 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=215218 PchlR47_RS28810 WP_009045846.1 6433568..6434080(-) (ssb) [Pseudomonas chlororaphis strain R47]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=215218 PchlR47_RS28810 WP_009045846.1 6433568..6434080(-) (ssb) [Pseudomonas chlororaphis strain R47]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment