Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BKD02_RS00070 Genome accession   NZ_CP019390
Coordinates   13433..13942 (-) Length   169 a.a.
NCBI ID   WP_009364346.1    Uniprot ID   -
Organism   Brucella sp. 09RB8910     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8433..18942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKD02_RS00055 (BKD02_00055) - 11068..11697 (+) 630 WP_006070834.1 MarC family protein -
  BKD02_RS00060 (BKD02_00060) phnN 11788..12366 (-) 579 WP_076770445.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  BKD02_RS00065 (BKD02_00065) phnF 12553..13314 (+) 762 Protein_13 phosphonate metabolism transcriptional regulator PhnF -
  BKD02_RS00070 (BKD02_00070) ssb 13433..13942 (-) 510 WP_009364346.1 single-stranded DNA-binding protein Machinery gene
  BKD02_RS00075 (BKD02_00075) - 14510..14710 (+) 201 WP_076770446.1 hypothetical protein -
  BKD02_RS00080 (BKD02_00080) uvrA 14841..17765 (+) 2925 WP_076770447.1 excinuclease ABC subunit UvrA -
  BKD02_RS00085 (BKD02_00085) - 17950..18225 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18428.21 Da        Isoelectric Point: 5.3476

>NTDB_id=215100 BKD02_RS00070 WP_009364346.1 13433..13942(-) (ssb) [Brucella sp. 09RB8910]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGSSGGFS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=215100 BKD02_RS00070 WP_009364346.1 13433..13942(-) (ssb) [Brucella sp. 09RB8910]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGGGACCGCCAGACCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCTAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGTGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGCGGCAATCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCGGCAGCAGCGGCGGTTTCTCG
CGCGATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.544
  ssb Vibrio cholerae strain A1552

48.555

100

0.497
  ssb Neisseria meningitidis MC58

39.106

100

0.414
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.402

Multiple sequence alignment