Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BKD03_RS06155 Genome accession   NZ_CP019347
Coordinates   36304..36813 (-) Length   169 a.a.
NCBI ID   WP_070997567.1    Uniprot ID   -
Organism   Brucella sp. 09RB8471     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 31304..41813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKD03_RS06140 (BKD03_06140) - 33791..34419 (+) 629 Protein_34 MarC family protein -
  BKD03_RS06145 (BKD03_06145) phnN 34510..35088 (-) 579 WP_076779473.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  BKD03_RS06150 (BKD03_06150) phnF 35274..36071 (+) 798 WP_076779476.1 phosphonate metabolism transcriptional regulator PhnF -
  BKD03_RS06155 (BKD03_06155) ssb 36304..36813 (-) 510 WP_070997567.1 single-stranded DNA-binding protein Machinery gene
  BKD03_RS17610 - 36984..37370 (+) 387 WP_154143029.1 hypothetical protein -
  BKD03_RS06160 (BKD03_06160) - 37383..37601 (+) 219 WP_008935845.1 hypothetical protein -
  BKD03_RS06165 (BKD03_06165) uvrA 37715..40637 (+) 2923 Protein_40 excinuclease ABC subunit UvrA -
  BKD03_RS06170 (BKD03_06170) - 40820..41095 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18456.26 Da        Isoelectric Point: 5.3476

>NTDB_id=214966 BKD03_RS06155 WP_070997567.1 36304..36813(-) (ssb) [Brucella sp. 09RB8471]
MAGSVNKVILVGNLGADPEIRRLNSGDMVVNLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGSSGGFS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=214966 BKD03_RS06155 WP_070997567.1 36304..36813(-) (ssb) [Brucella sp. 09RB8471]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCTGGCGA
TATGGTTGTCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACTGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCACTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCAACGGAAATCGTACTGCAAAAATT
CCGTGGAGAGCTTCAGATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGTCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCGGCAGCAGCGGCGGTTTCTCG
CGCGATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.538
  ssb Vibrio cholerae strain A1552

47.977

100

0.491
  ssb Neisseria meningitidis MC58

39.106

100

0.414
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.402

Multiple sequence alignment