Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BV511_RS22385 Genome accession   NZ_CP019322
Coordinates   4775181..4775747 (+) Length   188 a.a.
NCBI ID   WP_076643847.1    Uniprot ID   -
Organism   Methylorubrum extorquens strain PSBB040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4770181..4780747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV511_RS22360 (BV511_22360) - 4770535..4771653 (+) 1119 WP_076643843.1 NADH:flavin oxidoreductase/NADH oxidase -
  BV511_RS22365 (BV511_22365) - 4771808..4772581 (-) 774 WP_003604644.1 phosphodiester glycosidase family protein -
  BV511_RS22370 (BV511_22370) - 4772811..4773377 (+) 567 WP_076643844.1 hypothetical protein -
  BV511_RS22375 (BV511_22375) - 4773430..4773837 (-) 408 WP_076643845.1 DUF4174 domain-containing protein -
  BV511_RS22380 (BV511_22380) - 4773930..4774946 (+) 1017 WP_076643846.1 NADP-dependent oxidoreductase -
  BV511_RS22385 (BV511_22385) ssb 4775181..4775747 (+) 567 WP_076643847.1 single-stranded DNA-binding protein Machinery gene
  BV511_RS22390 (BV511_22390) - 4776124..4776729 (+) 606 WP_076643848.1 XRE family transcriptional regulator -
  BV511_RS22395 (BV511_22395) - 4776802..4777161 (+) 360 WP_076643849.1 hypothetical protein -
  BV511_RS22400 (BV511_22400) panC 4777238..4778095 (+) 858 WP_076643850.1 pantoate--beta-alanine ligase -
  BV511_RS22405 (BV511_22405) - 4778508..4780610 (+) 2103 Protein_4400 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20013.79 Da        Isoelectric Point: 6.0203

>NTDB_id=214857 BV511_RS22385 WP_076643847.1 4775181..4775747(+) (ssb) [Methylorubrum extorquens strain PSBB040]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSGRS
GGGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=214857 BV511_RS22385 WP_076643847.1 4775181..4775747(+) (ssb) [Methylorubrum extorquens strain PSBB040]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCAACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATT
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAATCGGGCGCGGAGAAGTACACCACCGAAGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGCGGCGGTGGCGGCGGCGACTTCGCGGGCGAGGATGAGGGCGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTGGTGATCGCGGCGGCGACCGCGGCGGGCGCGACGATTACGGCTCGGGCCGCTCC
GGTGGCGGTGGCGGCGGCGATCGCCGGCCCTCCTCGGGCGGCGGCGCCAAGCCGAACTACGACCTCGACGACGACATCCC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.692

100

0.495
  ssb Vibrio cholerae strain A1552

48.913

97.872

0.479
  ssb Neisseria gonorrhoeae MS11

41.622

98.404

0.41
  ssb Neisseria meningitidis MC58

41.081

98.404

0.404

Multiple sequence alignment