Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BWP24_RS01745 Genome accession   NZ_CP019293
Coordinates   365409..366053 (-) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain LMB29     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 360409..371053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP24_RS01735 (BWP24_01775) uvrA 361411..364233 (-) 2823 WP_077200162.1 excinuclease ABC subunit UvrA -
  BWP24_RS01740 (BWP24_01780) galU 364372..365244 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BWP24_RS01745 (BWP24_01785) qstR 365409..366053 (-) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  BWP24_RS01750 (BWP24_01790) ssb 366347..366883 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  BWP24_RS01755 (BWP24_01795) csrD 367131..369140 (+) 2010 WP_077200163.1 RNase E specificity factor CsrD -
  BWP24_RS01760 (BWP24_01800) - 369152..370600 (+) 1449 Protein_285 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=214629 BWP24_RS01745 WP_005432827.1 365409..366053(-) (qstR) [Vibrio campbellii strain LMB29]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=214629 BWP24_RS01745 WP_005432827.1 365409..366053(-) (qstR) [Vibrio campbellii strain LMB29]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCAATAAAAAACCTTCCTCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACAGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment