Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BWP24_RS01520 | Genome accession | NZ_CP019293 |
| Coordinates | 313951..314544 (+) | Length | 197 a.a. |
| NCBI ID | WP_005432718.1 | Uniprot ID | A0A812GEL0 |
| Organism | Vibrio campbellii strain LMB29 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 308951..319544
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWP24_RS01505 (BWP24_01545) | - | 309637..312204 (-) | 2568 | WP_047482703.1 | penicillin-binding protein 1A | - |
| BWP24_RS01510 (BWP24_01550) | pilM | 312383..313399 (+) | 1017 | WP_005432712.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| BWP24_RS01515 (BWP24_01555) | pilN | 313383..313958 (+) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| BWP24_RS01520 (BWP24_01560) | pilO | 313951..314544 (+) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BWP24_RS01525 (BWP24_01565) | pilP | 314534..315049 (+) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| BWP24_RS01530 (BWP24_01570) | pilQ | 315084..316826 (+) | 1743 | WP_050906101.1 | type IV pilus secretin PilQ | Machinery gene |
| BWP24_RS01535 (BWP24_01575) | aroK | 317015..317533 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| BWP24_RS01540 (BWP24_01580) | aroB | 317565..318665 (+) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23002.49 Da Isoelectric Point: 4.8135
>NTDB_id=214626 BWP24_RS01520 WP_005432718.1 313951..314544(+) (pilO) [Vibrio campbellii strain LMB29]
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
Nucleotide
Download Length: 594 bp
>NTDB_id=214626 BWP24_RS01520 WP_005432718.1 313951..314544(+) (pilO) [Vibrio campbellii strain LMB29]
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAGTGGCCGCTGGTACCTCAGTTGGTGGCGATTCTTCTTAT
GGTGGTGTTGATCCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCGGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CGCTCAATATTGAGCTAACGGGTGACTTCCATGACATCGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAGAAAGATGCGAAATAA
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAGTGGCCGCTGGTACCTCAGTTGGTGGCGATTCTTCTTAT
GGTGGTGTTGATCCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCGGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CGCTCAATATTGAGCTAACGGGTGACTTCCATGACATCGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAGAAAGATGCGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
99.474 |
96.447 |
0.959 |
| pilO | Vibrio cholerae strain A1552 |
72.251 |
96.954 |
0.701 |