Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | BWP24_RS01515 | Genome accession | NZ_CP019293 |
| Coordinates | 313383..313958 (+) | Length | 191 a.a. |
| NCBI ID | WP_005432710.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LMB29 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 308383..318958
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWP24_RS01500 (BWP24_01540) | oxyR | 308651..309559 (+) | 909 | WP_005432705.1 | DNA-binding transcriptional regulator OxyR | - |
| BWP24_RS01505 (BWP24_01545) | - | 309637..312204 (-) | 2568 | WP_047482703.1 | penicillin-binding protein 1A | - |
| BWP24_RS01510 (BWP24_01550) | pilM | 312383..313399 (+) | 1017 | WP_005432712.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| BWP24_RS01515 (BWP24_01555) | pilN | 313383..313958 (+) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| BWP24_RS01520 (BWP24_01560) | pilO | 313951..314544 (+) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BWP24_RS01525 (BWP24_01565) | pilP | 314534..315049 (+) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| BWP24_RS01530 (BWP24_01570) | pilQ | 315084..316826 (+) | 1743 | WP_050906101.1 | type IV pilus secretin PilQ | Machinery gene |
| BWP24_RS01535 (BWP24_01575) | aroK | 317015..317533 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| BWP24_RS01540 (BWP24_01580) | aroB | 317565..318665 (+) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22194.53 Da Isoelectric Point: 9.4267
>NTDB_id=214625 BWP24_RS01515 WP_005432710.1 313383..313958(+) (pilN) [Vibrio campbellii strain LMB29]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=214625 BWP24_RS01515 WP_005432710.1 313383..313958(+) (pilN) [Vibrio campbellii strain LMB29]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGAATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAGGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTTATGTTTAAAGATGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGAATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAGGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTTATGTTTAAAGATGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
99.476 |
100 |
0.995 |
| pilN | Vibrio cholerae strain A1552 |
60.452 |
92.67 |
0.56 |