Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC53_RS24385 Genome accession   NZ_CP019292
Coordinates   28744..29265 (-) Length   173 a.a.
NCBI ID   WP_118894524.1    Uniprot ID   A0AAN1PUP3
Organism   Vibrio vulnificus strain FORC_053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 23744..34265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS24350 (FORC53_4598) - 24324..24869 (+) 546 WP_045592235.1 phosphatase PAP2 family protein -
  FORC53_RS24355 (FORC53_4599) - 25026..25499 (+) 474 WP_118894514.1 hypothetical protein -
  FORC53_RS24360 (FORC53_4600) - 25537..26574 (-) 1038 WP_118894516.1 hypothetical protein -
  FORC53_RS24365 (FORC53_4601) - 26730..27080 (+) 351 WP_118894518.1 hypothetical protein -
  FORC53_RS24370 (FORC53_4602) - 27124..27594 (-) 471 WP_198434360.1 hypothetical protein -
  FORC53_RS24375 (FORC53_4603) - 27642..28100 (-) 459 WP_021486336.1 hypothetical protein -
  FORC53_RS24380 (FORC53_4604) - 28109..28585 (-) 477 WP_118894522.1 hypothetical protein -
  FORC53_RS24385 (FORC53_4605) ssb 28744..29265 (-) 522 WP_118894524.1 single-stranded DNA-binding protein Machinery gene
  FORC53_RS24390 (FORC53_4606) - 29596..30174 (-) 579 WP_118894526.1 hypothetical protein -
  FORC53_RS24395 (FORC53_4607) - 30273..30989 (-) 717 WP_118894528.1 hypothetical protein -
  FORC53_RS24400 (FORC53_4608) - 31003..31380 (-) 378 WP_053312619.1 hypothetical protein -
  FORC53_RS24405 (FORC53_4609) - 31516..31905 (+) 390 WP_038128603.1 hypothetical protein -
  FORC53_RS24410 (FORC53_4610) - 31927..32277 (+) 351 WP_048516408.1 hypothetical protein -
  FORC53_RS24415 (FORC53_4611) - 32553..33332 (+) 780 WP_118894530.1 hypothetical protein -
  FORC53_RS24420 (FORC53_4612) - 33393..33671 (+) 279 WP_118894532.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19220.27 Da        Isoelectric Point: 6.4879

>NTDB_id=214617 FORC53_RS24385 WP_118894524.1 28744..29265(-) (ssb) [Vibrio vulnificus strain FORC_053]
MASRGVNKVILVGNLGGDPEVRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQQGQDRYTTEVVVQGYQGIMQMLGGRAQGGQGQPAQGRAQGGQPQQHAQPQQHAQPQQHAQPQQPQPQY
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=214617 FORC53_RS24385 WP_118894524.1 28744..29265(-) (ssb) [Vibrio vulnificus strain FORC_053]
ATGGCATCTCGTGGCGTAAATAAAGTAATCCTCGTAGGCAACTTAGGTGGCGACCCAGAAGTTCGTTACATGCCTAACGG
TGGCGCGGTGGCTAATATCACTATCGCAACATCTGAATCATGGCGCGACAAAGCGACTGGTGAGCAGCGTGAAAAAACTG
AATGGCATCGCGTAGTTCTTTTCGGAAAACTAGCAGAAGTGGCTGGCGAGTACCTACGTAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTACAAACTCGTAAATGGCAAGATCAGCAAGGTCAAGATCGCTACACTACAGAAGTTGTAGTTCAGGGCTA
CCAAGGCATTATGCAAATGCTAGGCGGTCGCGCTCAAGGCGGTCAAGGTCAACCAGCACAAGGTCGCGCTCAAGGTGGTC
AACCTCAGCAACATGCTCAGCCTCAGCAACACGCTCAGCCTCAGCAACACGCTCAGCCTCAGCAGCCGCAGCCACAATAC
AATGAACCACCAATGGATTTTGACGACGACATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.899

100

0.832
  ssb Glaesserella parasuis strain SC1401

57.692

100

0.607
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.468
  ssb Neisseria meningitidis MC58

45.198

100

0.462

Multiple sequence alignment