Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC53_RS01890 Genome accession   NZ_CP019290
Coordinates   388771..389310 (+) Length   179 a.a.
NCBI ID   WP_011079389.1    Uniprot ID   Q7MHB8
Organism   Vibrio vulnificus strain FORC_053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 383771..394310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS01875 (FORC53_0331) uvrA 383799..386621 (-) 2823 WP_118893238.1 excinuclease ABC subunit UvrA -
  FORC53_RS01880 (FORC53_0332) galU 386763..387635 (-) 873 WP_118893240.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FORC53_RS01885 (FORC53_0333) qstR 387824..388471 (-) 648 WP_011079388.1 response regulator transcription factor Regulator
  FORC53_RS01890 (FORC53_0334) ssb 388771..389310 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  FORC53_RS01895 (FORC53_0335) csrD 389463..391460 (+) 1998 WP_198434265.1 RNase E specificity factor CsrD -
  FORC53_RS01900 (FORC53_0336) - 391473..392933 (+) 1461 WP_118893244.1 MSHA biogenesis protein MshI -
  FORC53_RS01905 (FORC53_0337) gspM 392930..393580 (+) 651 WP_011079392.1 type II secretion system protein GspM -
  FORC53_RS01910 (FORC53_0338) - 393573..393893 (+) 321 WP_011079393.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19794.97 Da        Isoelectric Point: 5.2358

>NTDB_id=214580 FORC53_RS01890 WP_011079389.1 388771..389310(+) (ssb) [Vibrio vulnificus strain FORC_053]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=214580 FORC53_RS01890 WP_011079389.1 388771..389310(+) (ssb) [Vibrio vulnificus strain FORC_053]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCAGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTATACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCTATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.333

100

0.838
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.553
  ssb Neisseria meningitidis MC58

46.237

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.237

100

0.48

Multiple sequence alignment