Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   L_RS05270 Genome accession   NC_002662
Coordinates   1035763..1036443 (+) Length   226 a.a.
NCBI ID   WP_003131898.1    Uniprot ID   Q9CGT5
Organism   Lactococcus lactis subsp. lactis Il1403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030763..1041443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L_RS05250 (L30853) - 1031127..1031642 (+) 516 WP_003131889.1 DUF2127 domain-containing protein -
  L_RS05255 (L0128) - 1031646..1032971 (+) 1326 WP_003131891.1 sensor histidine kinase -
  L_RS05260 (L32731) - 1032978..1033634 (+) 657 WP_010905677.1 phosphatase PAP2 family protein -
  L_RS05265 (L33556) glmS 1033815..1035632 (+) 1818 WP_010905678.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  L_RS05270 (L0306) radC 1035763..1036443 (+) 681 WP_003131898.1 RadC family protein Machinery gene
  L_RS05275 (L36404) - 1036642..1037766 (-) 1125 WP_010905679.1 tyrosine-type recombinase/integrase -
  L_RS05280 (L37651) - 1037889..1038434 (-) 546 WP_010905680.1 PH domain-containing protein -
  L_RS05285 (L38253) - 1038491..1038928 (-) 438 WP_010905681.1 ImmA/IrrE family metallo-endopeptidase -
  L_RS05290 (L38687) - 1038925..1039467 (-) 543 WP_010905682.1 helix-turn-helix domain-containing protein -
  L_RS05295 (L39394) - 1039635..1039853 (+) 219 WP_010905683.1 DUF739 family protein -
  L_RS05300 (L39625) - 1039890..1040633 (+) 744 WP_010905684.1 ORF6C domain-containing protein -
  L_RS05305 (L40005) - 1040646..1040981 (+) 336 WP_003131910.1 DUF771 domain-containing protein -
  L_RS05310 (L200033) - 1041119..1041313 (+) 195 WP_010905685.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25801.67 Da        Isoelectric Point: 7.9247

>NTDB_id=21362 L_RS05270 WP_003131898.1 1035763..1036443(+) (radC) [Lactococcus lactis subsp. lactis Il1403]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=21362 L_RS05270 WP_003131898.1 1035763..1036443(+) (radC) [Lactococcus lactis subsp. lactis Il1403]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA
TAAAATATTTACTACCAAAATAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CGT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.045

98.23

0.442
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.541

98.23

0.398

Multiple sequence alignment