Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AO536_RS03670 Genome accession   NZ_CP019171
Coordinates   786841..788457 (+) Length   538 a.a.
NCBI ID   WP_012202606.1    Uniprot ID   -
Organism   MAG: Delftia acidovorans isolate ANG1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781841..793457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO536_RS03645 argS 782028..783725 (+) 1698 WP_012202601.1 arginine--tRNA ligase -
  AO536_RS03650 - 783746..784435 (+) 690 WP_012202602.1 SPOR domain-containing protein -
  AO536_RS03655 - 784517..785167 (+) 651 WP_012202603.1 thiol:disulfide interchange protein DsbA/DsbL -
  AO536_RS03660 lptA 785339..786001 (+) 663 WP_013804753.1 lipopolysaccharide transport periplasmic protein LptA -
  AO536_RS03665 lptB 785998..786786 (+) 789 WP_012202605.1 LPS export ABC transporter ATP-binding protein -
  AO536_RS03670 rpoN/rpoN1 786841..788457 (+) 1617 WP_012202606.1 RNA polymerase factor sigma-54 Machinery gene
  AO536_RS03675 rtcR 788496..790103 (-) 1608 WP_012202607.1 RNA repair transcriptional activator RtcR -
  AO536_RS03680 - 790801..791940 (+) 1140 WP_012202608.1 slipin family protein -
  AO536_RS03685 - 792012..792857 (+) 846 WP_012202609.1 hypothetical protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59264.34 Da        Isoelectric Point: 4.6422

>NTDB_id=213613 AO536_RS03670 WP_012202606.1 786841..788457(+) (rpoN/rpoN1) [MAG: Delftia acidovorans isolate ANG1]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEEGDHDAAAGTREPAAPGAEATESFQESR
ADQPSAAVEWEPSSDASSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGEEDEADATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGSGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRR
FADVQRQIVVPDVIVRPVRSGAGRMDFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=213613 AO536_RS03670 WP_012202606.1 786841..788457(+) (rpoN/rpoN1) [MAG: Delftia acidovorans isolate ANG1]
TTGAAGCCCGGTCTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACTCCCCAGCTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGAGGAGG
GCGATCACGATGCGGCTGCCGGCACCCGCGAGCCTGCCGCGCCCGGCGCCGAGGCCACGGAGTCCTTCCAGGAAAGCCGC
GCAGACCAGCCTTCGGCGGCGGTGGAGTGGGAGCCCTCGTCGGATGCATCCTCCGGCGATGCCGTGGAGACTTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGACGGCCAGACCAACTCGGGCAACGATGACCGCGACTGGGGCAGCGATGCGCCCT
CCAGCCGCACGCGCGGGCAGGGCGAGGAAGACGAGGCCGATGCCACCGAACTGGCACGCAGCGCCGAAAGCCTGACCGAC
CACCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGACCGCGCCGCACTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGATCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAACTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCAGCGGCAGTGCCGAGGACGAAGACCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGCGACCTGCGCAAGCTCGCCA
GCCTGTGCGGTGCGCGCGAGGAGCGGCTGCGCGAGGCGCTGGTGCTGATCACCCGGCTGGAGCCACGCCCGGGCCGGCGC
TTTGCCGACGTGCAGCGCCAGATCGTCGTGCCCGACGTCATCGTGCGCCCCGTGCGCAGCGGCGCGGGCCGCATGGACTT
CAGCGTGCAGCTCAACCCCGACGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACAGGG
GCAGCGAAGGCCATGCAGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAGGCCGGTGGCAATGCCTCCAGCACG
GCCGTGCGCGCGCTGATCAAGCAGTTCGTCGCGGCCGAAGACCCCAAGAAGCCGCTGTCGGACAACCAGCTCGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACGGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.515

Multiple sequence alignment