Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AO536_RS04405 Genome accession   NZ_CP019171
Coordinates   950884..951450 (-) Length   188 a.a.
NCBI ID   WP_012202749.1    Uniprot ID   A0A080NKP3
Organism   MAG: Delftia acidovorans isolate ANG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 945884..956450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO536_RS04380 paaC 946036..946818 (+) 783 WP_012202744.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC -
  AO536_RS04385 paaD 946818..947387 (+) 570 WP_012202745.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD -
  AO536_RS04390 paaE 947384..948481 (+) 1098 WP_012202746.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -
  AO536_RS04395 - 948512..949966 (-) 1455 WP_012202747.1 SulP family inorganic anion transporter -
  AO536_RS04400 - 950300..950797 (-) 498 WP_012202748.1 hypothetical protein -
  AO536_RS04405 ssb 950884..951450 (-) 567 WP_012202749.1 single-stranded DNA-binding protein Machinery gene
  AO536_RS04410 - 951611..952786 (-) 1176 WP_043780591.1 MFS transporter -
  AO536_RS04415 uvrA 953050..956163 (+) 3114 WP_012202751.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20389.52 Da        Isoelectric Point: 5.9554

>NTDB_id=213614 AO536_RS04405 WP_012202749.1 950884..951450(-) (ssb) [MAG: Delftia acidovorans isolate ANG1]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=213614 AO536_RS04405 WP_012202749.1 950884..951450(-) (ssb) [MAG: Delftia acidovorans isolate ANG1]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGATCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCGCCCATGGCACCCCCGCCCCAGCGCGCAGCCTCGGGCTTTGACGATATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A080NKP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452

Multiple sequence alignment